Dear FSL experts,
I am currently running into a registration problem when registering my resting state data. My filtered_func_data is not transforming into standard space but stays in the individual space. I have played around with all of the different settings but still coming up short.
When preprocessing my data I input my main structural image and keep the standard space image as the default MNI152 T1 2mm. I keep normal search setting and BBR for my functional data. I should point out that I do not have any high res images to input in the expanded functional image. When I click on go the data is processed fine and no errors are reported however the functional images are in the wrong space (see below):
sizeof_hdr 348
data_type FLOAT32
dim0 4
dim1 64
dim2 80
dim3 33
dim4 180
dim5 1
dim6 1
dim7 1
vox_units mm
The issue comes when I try to extract the mean time series of ROIs that i defined in the MNI 152 T1 2mm standard space. The dimensions for that are #91 #109 #91. The two files are in separate spaces.
sizeof_hdr 348
data_type FLOAT32
dim0 3
dim1 91
dim2 109
dim3 91
dim4 1
dim5 1
dim6 1
dim7 1
vox_units mm
How can I get my functional images into the standard space as are the ROIs? Any help on this would be a massive help.
Many thanks in advance,
Kris
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