Great. Thank you!
Also, I noticed that there are some links to examples in the
Melodic-FAQ. However the links
(http://fsl.fmrib.ox.ac.uk/fslcourse/lectures/melodic/_2005_GLM.fpd/s_1030_visdata.htm
and http://users.fmrib.ox.ac.uk/~beckmann/homepage/academic/littleshop/index.html)
seem to be broken. Do you have updated link locations?
Thanks,
Rita
On Thu, Feb 27, 2014 at 2:37 AM, Stephen Smith <[log in to unmask]> wrote:
> Hi
>
>
> On 26 Feb 2014, at 22:33, Rita Elena Loiotile <[log in to unmask]> wrote:
>
> Hi,
> 2 questions:
> 1) Is it recommended to leave MCFLIRT motion correction on (and
> subsequently include the found motion parameters in my GLM) if I am
> also using MELODIC to remove motion related components?
>
>
> yes - definitely
>
> 2) Is there a guide/rule of thumb for spotting noise related
> components-- either from motion or another source. Seems like flaming
> brain and striated looking images should definitely be removed but I'm
> not sure if anything else...
>
>
> Have a look in the FIX paper just out in NeuroImage (Salimi-Khorshidi),
> which discusses different artefact components. Also using FIX (see FSL
> plugins wiki) can give good results in classifying components for you -
> particularly if you can train it on your kind of data.
>
> Cheers.
>
>
>
>
> Thanks!
>
>
>
> ---------------------------------------------------------------------------
> Stephen M. Smith, Professor of Biomedical Engineering
> Associate Director, Oxford University FMRIB Centre
>
> FMRIB, JR Hospital, Headington, Oxford OX3 9DU, UK
> +44 (0) 1865 222726 (fax 222717)
> [log in to unmask] http://www.fmrib.ox.ac.uk/~steve
> ---------------------------------------------------------------------------
>
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