regarding No valid labelling file specified problem,
I found an error in .fix_2b_predict.log. It was caused by matlab's
libgfortran.so.3.0. According to some users on the internet, this is a
matlab's bug.
The solution is simple:
sudo ln -s /usr/lib/x86_64-linux-gnu/libgfortran.so.3.0.0
/path/to/your/MATLAB/version/sys/os/glnxa64/libgfortran.so.3
or
sudo ln -s /usr/lib/x86_64-linux-gnu/libgfortran.so.3.0.0
/path/to/your/MCR/version/sys/os/glnxa64/libgfortran.so.3
On Wed, Feb 26, 2014 at 10:38 PM, Xue, Feng <[log in to unmask]> wrote:
> For the results part, I have met the same problem, I ran fix on my own
> preprocessed data, and got output as below:
> FIX Feature extraction for Melodic output directory:
> sub392/analysis/test_pre.feat
> create edge masks
> run FAST
> registration of standard space masks
> extract features
> FIX Classifying components in Melodic directory:
> sub392/analysis/test_pre.feat using training file:
> /opt/fmritools/fsl-fix/training_files/Standard.RData and threshold 20
> No valid labelling file specified
>
> Help please:)
>
> On Fri, Jan 17, 2014 at 9:41 AM, SUBSCRIBE FSL B. Jeong
> <[log in to unmask]> wrote:
>> Hi Duncan Mortimer,
>>
>> I can not find 'CIFTIMatlabReaderWriter' files in my workbench directory (redhat6 64bit).
>> Even if I changed the path in fix_3_clean.m, 'filtered_func_data_clean.nii.gz' was not created.
>>
>> Do you have ''CIFTIMatlabReaderWriter' files in your workbench directory?
>>
>> Thanks,
>>
>> Jeong
>>
>>
>>> fix test+.feat /APP/HPC/NeuroscienceSoftware/fix1.05/training_files/Standard.RData 20 -m
>> FIX Feature extraction for Melodic output directory: test+.feat
>> create edge masks
>> run FAST
>> registration of standard space masks
>> extract features
>> FIX Classifying components in Melodic directory: test+.feat using training file: /APP/HPC/NeuroscienceSoftware/fix1.05/training_files/Standard.RData and threshold 20
>> No valid labelling file specified
>
>
>
> --
> Best Regards
>
> Xue, Feng Ph.D.
>
> Psychology Department
> University of Southern California
> Los Angeles CA, 90089
> Mobile: +1 213-249-1040
> ==============================================
> National Key Laboratory of Cognitive Neuroscience and Learning
> Beijing Normal University
> Beijing, China. 100875
> Mobile: +86 13810154455
> web: http://psychbrain.bnu.edu.cn
--
Best Regards
Xue, Feng Ph.D.
Psychology Department
University of Southern California
Los Angeles CA, 90089
Mobile: +1 213-249-1040
==============================================
National Key Laboratory of Cognitive Neuroscience and Learning
Beijing Normal University
Beijing, China. 100875
Mobile: +86 13810154455
web: http://psychbrain.bnu.edu.cn
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