Hi Domenico,
Can you send me the results of running fslinfo on all_FA_skeletonised.nii and mask_0008.nii?
Kind Regards
Matthew
> Dear Mark,
>
> I upgraded FSL to 5.0.6 as you suggested.
> I launched setup_masks:
>
>> setup_masks ANOVA.mat ANOVA.con mask sub01.nii sub02.nii sub03.nii sub04.nii sub
> 05.nii sub06.nii sub07.nii sub08.nii sub09.nii sub10.nii sub11.nii sub12.nii sub
> 13.nii sub14.nii sub15.nii sub16.nii sub17.nii sub18.nii sub19.nii sub20.nii sub
> 21.nii sub22.nii sub23.nii sub24.nii sub25.nii sub26.nii sub28.nii sub29.nii sub
> 30.nii sub31.nii sub32.nii sub34.nii sub35.nii sub36.nii sub37.nii sub38.nii sub
> 39.nii sub40.nii sub41.nii sub42.nii sub43.nii sub44.nii sub45.nii sub47.nii sub
> 48.nii sub49.nii sub50.nii sub51.nii sub52.nii sub53.nii sub54.nii sub55.nii sub
> 56.nii sub57.nii sub58.nii sub59.nii sub60.nii sub61.nii sub62.nii sub63.nii
>
> Then:
>
> randomise -i all_FA_skeletonised.nii -o FA_all_lesions -d mask.mat -t mask.con --vxl=8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67 --vxf=mask_0008,mask_0009,mask_0010,mask_0011,mask_0012,mask_0013,mask_0014,mask_0015,mask_0016,mask_0017,mask_0018,mask_0019,mask_0020,mask_0021,mask_0022,mask_0023,mask_0024,mask_0025,mask_0026,mask_0027,mask_0028,mask_0029,mask_0030,mask_0031,mask_0032,mask_0033,mask_0034,mask_0035,mask_0036,mask_0037,mask_0038,mask_0039,mask_0040,mask_0041,mask_0042,mask_0043,mask_0044,mask_0045,mask_0046,mask_0047,mask_0048,mask_0049,mask_0050,mask_0051,mask_0052,mask_0053,mask_0054,mask_0055,mask_0056,mask_0057,mask_0058,mask_0059,mask_0060,mask_0061,mask_0062,mask_0063,mask_0064,mask_0065,mask_0066,mask_0067 -f ANOVA.fts -V -n 5000 --T2
>
> Now it gives me a different error:
>
> Loading Data:
> Loading voxelwise ev: mask_0008 for EV 8
> Image Exception : #3 :: Mask of different size used in matrix()
> ERROR: Program failed
>
> An exception has been thrown
> Mask of different size used in matrix()
>
> Exiting
>
> Which matrix? I Used fslinfo to verify the size of the masks but they are similar.
> What do you suggest?
>
> Thanks
>
> Domenico
>
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