Hello all,
I am having a problem with tbss_non_FA MD. When I run the script, it creates the all_MD.nii.gz file, but then gives me the error below, and does not create all_MD_skeletonised.
Any idea what I might have done wrong?
merging all upsampled MD images into single 4D image
projecting all_MD onto mean FA skeleton
/usr/local/fsl/bin/tbss_non_FA: line 104: 5972 Killed ${FSLDIR}/bin/tbss_skeleton -i mean_FA -p $thresh mean_FA_skeleton_mask_dst ${FSLDIR}/data/standard/LowerCingulum_1mm all_FA all_${ALTIM}_skeletonised -a all_$ALTIM
now run stats - for example:
randomise -i all_MD_skeletonised -o tbss_MD -m mean_FA_skeleton_mask -d design.mat -t design.con -n 500 --T2 -V
(after generating design.mat and design.con)
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