Hi,
It is technically possible to exclude certain slices, but this isn't coded easily into the standard tools.
So unless it is of critical importance I would just delete the volumes.
All the best,
Mark
On 21 Dec 2013, at 16:09, "Watson, Christopher" <[log in to unmask]> wrote:
> I don't know for certain. My first thought is that it wouldn't make sense; however, someone who knows a lot more than I do should comment.
>
> Chris
> ________________________________________
> From: FSL - FMRIB's Software Library [[log in to unmask]] on behalf of Dorian P. [[log in to unmask]]
> Sent: Saturday, December 21, 2013 9:37 AM
> To: [log in to unmask]
> Subject: Re: [FSL] Exclude diffusion slices from analysis
>
> Thank you Chris,
>
> Sounds interesting. I was hoping to remove single slices from some volumes rather than the entire volume? Would this make sense, or do I need absolutely to "kill" the entire volume containing the bad slice?
>
> Dorian
>
>
> 2013/12/20 Watson, Christopher <[log in to unmask]<mailto:[log in to unmask]>>
> I wrote a script to do that. Maybe this will work for you.
> ________________________________________
> From: FSL - FMRIB's Software Library [[log in to unmask]<mailto:[log in to unmask]>] on behalf of Dorian P. [[log in to unmask]<mailto:[log in to unmask]>]
> Sent: Friday, December 20, 2013 10:38 PM
> To: [log in to unmask]<mailto:[log in to unmask]>
> Subject: [FSL] Exclude diffusion slices from analysis
>
> Dear FSL list,
>
> I have some DTI data with random collapsed slices. I have marked these slices for every subject. Is there a way to exclude them from DTI analysis (bedpostx, probtrackx, dtifit, etc).
>
> Thank you and happy holidays.
>
> Dorian
> TJU
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