Hi,
Thanks for the info.
What happens if you just start matlab and try to load an image in directly with read_avw ?
For example:
im=read_avw('example_func');
This will help us know whether the problem is with read_avw or the environment setup by fix.
All the best,
Mark
On 7 Jan 2014, at 10:39, SUBSCRIBE FSL B. Jeong <[log in to unmask]> wrote:
> Hi Mark,
>
> My OS is redhat 6 in 64bit linux machine.
> FSL was patched with fsl-centos6_64-patch-5.0.6.
>
> Following error came up when I did run 'fix' script for ICA output.
>
> Thanks
>
> Jeong
>
>> fix test.feat $fix_PATH/fix1.05/training_files/Standard.RData 20 -m
> FIX Feature extraction for Melodic output directory: test.feat
> create edge masks
> run FAST
> registration of standard space masks
> extract features
> Error using fread
> Invalid file identifier. Use fopen to generate a valid file identifier.
>
> Error in read_avw_hdr (line 21)
> testval = fread(fid,1,'int32');
>
> Error in read_avw (line 16)
> [dims,scales,bpp,endian,datatype]= read_avw_hdr(fname);
>
> Error in functionmotionconfounds (line 25)
> confounds=functionnormalise(reshape(read_avw('mc/prefiltered_func_data_mcf_conf_hp'),size(confounds,2),size(confounds,1))');
>
> Error in featuremotioncorrelation (line 12)
> functionmotionconfounds;
>
> Error in fix_1a_extract_features (line 88)
> featureMatrix(globalIcCounter, 039:044) =
> featuremotioncorrelation(icWiseTimeSeries, icaFolder);
>
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