Hi,
There is no registration or alignment performed in step 1 of TBSS, so you should not expect these images to be aligned at this point.
All the best,
Mark
On 24 Jan 2014, at 15:34, Hsekar B <[log in to unmask]> wrote:
> Dear FSL experts,
> I have performed TBSS as instructed in the manual, after performing the tbss_1_preprocess step i find the images in the slice dir to be misaligned. i have performed the eddy correction too, kindly give me your valuable expert opinion
> thanking you in advance
>
> regards
>
> RB
> <Optimized-Optimized-CT_2.png>
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