Hi Mark,
Just want to say thank you for the help!
In the end, I re-ran SIENA on the entire dataset with BET "-B" option and the overall improvement in BET results was tremendous. I have also explored the combination of -B and -R. While these options take a lot more time to complete, I do not see much of a difference in the quality of the BET.
Best Wishes,
Elijah
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