Hello,
I individually ran fsl_anat on about 150 subjects. After running the subjects I copied the results into a new directory and ran first_roi_slicesdir on them. The results looked off, so I looked at a few in their individual fsl_anat created folders (ie subject.anat/first_results). The results in the individual folders looked very good and did not match what was seen when I ran the big group. Does anyone have any idea why I would see different results when I use first_roi_slicesdir in a large group vs individually?
Thank you,
Erica
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