Hello,
I am currently trying to run the BASIL tutorial data (along with my own asl data) and I am dealing with an error after running oxford_asl (asl_file appears to run fine). I have included the error below. I am currently running FSL 5.0.6. Any recommendations on how I might resolve this issue?
Cheers,
Nate
FABBER release v2.0
Forward Model version:
$Id: fwdmodel_asl_grase.cc,v 1.22 2013/09/04 15:13:00 chappell Exp $
Loading mask data from '/tmp/fsl_DlxU4S_ox_asl/mask'
Loading data from 'pcasl_diffdata'
fabber: inference_spatialvb.cc:1822: void SpatialVariationalBayes::CalcNeighbours(const NEWIMAGE::volume<float>&): Assertion `checkNofN == 1' failed.
/usr/local/fsl/bin/basil: line 100: 1293 Aborted $fabber --data=$infile --mask=$mask --output=$outdir/step$step --model=$model --max-iterations=$nbiter $allinstruct $vbinstruct $extras -@ $options $1
End.
Cannot open volume /tmp/fsl_DlxU4S_ox_asl/basil/step2/mean_ftiss for reading!
Cannot open volume /tmp/fsl_DlxU4S_ox_asl/basil/step2/mean_delttiss for reading!
Image Exception : #22 :: ERROR: Could not open image /tmp/fsl_DlxU4S_ox_asl///ftiss
terminate called after throwing an instance of 'RBD_COMMON::BaseException'
/usr/local/fsl/bin/oxford_asl: line 172: 1422 Aborted flirt -in $tempdir/$subdir/$param -applyxfm -init $tempdir/asl2struct.mat -ref $struc -out $outdir/struct_space/$subdir/$parname
Image Exception : #22 :: ERROR: Could not open image /tmp/fsl_DlxU4S_ox_asl///delttiss
terminate called after throwing an instance of 'RBD_COMMON::BaseException'
/usr/local/fsl/bin/oxford_asl: line 172: 1470 Aborted flirt -in $tempdir/$subdir/$param -applyxfm -init $tempdir/asl2struct.mat -ref $struc -out $outdir/struct_space/$subdir/$parname
Output is perfusion/
OXFORD_ASL - done.
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