On 17 Jan 2014, at 06:57, SUBSCRIBE FSL B. Jeong <[log in to unmask]> wrote:
> Dear FSL Experts,
>
> I performed 'fix' for a feat directory.
> I have two questions.
>
> 1) In 'fix_3_clean.m', following command can not be found in the workbench directory (had been downloaded from HPC website)
>
> CIFTI='/vols/Data/HCP/workbench/CIFTIMatlabReaderWriter’;
You need to change the path to point at your install of workbench, e.g. change ‘/vols/Data/HCP’ to the folder containing the workbench folder
>
> 2) In terms of results, it seems like need to more results such as 'filtered_func_data_clean.nii.gz’.
Someone else will have to answer this question.
>
> Followings are command & output.
>
> Thank you,
>
> Jeong
>
>> fix test+.feat /APP/HPC/NeuroscienceSoftware/fix1.05/training_files/Standard.RData 20 -m
> FIX Feature extraction for Melodic output directory: test+.feat
> create edge masks
> run FAST
> registration of standard space masks
> extract features
> FIX Classifying components in Melodic directory: test+.feat using training file: /APP/HPC/NeuroscienceSoftware/fix1.05/training_files/Standard.RData and threshold 20
> No valid labelling file specified
>
>> ls
> absbrainthresh.txt design.frf design.png filtered_func_data.ica mask.nii.gz report.html report_reg.html
> design.con design.fsf design.ppm filtered_func_data.nii.gz mc report_log.html report_stats.html
> design_cov.png design.mat design.trg fix mean_func.nii.gz report_poststats.html report_unwarp.html
> design_cov.ppm design.min example_func.nii.gz logs reg report_prestats.html
>
>> ls fix
> dge1.nii.gz fastsg_pve_0.nii.gz features_info.csv logMatlab.txt std1mm2exfunc0dil2.nii.gz std1mm2exfunc2dil2.nii.gz std2exfunc.mat
> edge2.nii.gz fastsg_pve_1.nii.gz features.mat maske1.nii.gz std1mm2exfunc0dil.nii.gz std1mm2exfunc2dil.nii.gz std2highres.mat
> edge3.nii.gz fastsg_pve_2.nii.gz highres2std.mat maske2.nii.gz std1mm2exfunc0.nii.gz std1mm2exfunc2.nii.gz
> edge4.nii.gz fastsg_pveseg.nii.gz hr2exf.nii.gz maske3.nii.gz std1mm2exfunc1dil2.nii.gz std1mm2exfunc3dil2.nii.gz
> edge5.nii.gz fastsg_seg.nii.gz hr2exfTMP.nii.gz maske4.nii.gz std1mm2exfunc1dil.nii.gz std1mm2exfunc3dil.nii.gz
> fastsg_mixeltype.nii.gz features.csv hr2exfTMP.txt maske5.nii.gz std1mm2exfunc1.nii.gz std1mm2exfunc3.nii.gz
--
Duncan A B Mortimer DPhil MChem
Computing Officer, FMRIB Centre, University of Oxford,
John Radcliffe Hospital, Headington, Oxford OX3 9DU, UK.
Tel: (0)1865 222713 email: [log in to unmask]
Personal email (not for IT support): [log in to unmask]
|