Dear FSL Experts,
I performed 'fix' for a feat directory.
I have two questions.
1) In 'fix_3_clean.m', following command can not be found in the workbench directory (had been downloaded from HPC website)
CIFTI='/vols/Data/HCP/workbench/CIFTIMatlabReaderWriter';
2) In terms of results, it seems like need to more results such as 'filtered_func_data_clean.nii.gz'.
Followings are command & output.
Thank you,
Jeong
> fix test+.feat /APP/HPC/NeuroscienceSoftware/fix1.05/training_files/Standard.RData 20 -m
FIX Feature extraction for Melodic output directory: test+.feat
create edge masks
run FAST
registration of standard space masks
extract features
FIX Classifying components in Melodic directory: test+.feat using training file: /APP/HPC/NeuroscienceSoftware/fix1.05/training_files/Standard.RData and threshold 20
No valid labelling file specified
> ls
absbrainthresh.txt design.frf design.png filtered_func_data.ica mask.nii.gz report.html report_reg.html
design.con design.fsf design.ppm filtered_func_data.nii.gz mc report_log.html report_stats.html
design_cov.png design.mat design.trg fix mean_func.nii.gz report_poststats.html report_unwarp.html
design_cov.ppm design.min example_func.nii.gz logs reg report_prestats.html
> ls fix
dge1.nii.gz fastsg_pve_0.nii.gz features_info.csv logMatlab.txt std1mm2exfunc0dil2.nii.gz std1mm2exfunc2dil2.nii.gz std2exfunc.mat
edge2.nii.gz fastsg_pve_1.nii.gz features.mat maske1.nii.gz std1mm2exfunc0dil.nii.gz std1mm2exfunc2dil.nii.gz std2highres.mat
edge3.nii.gz fastsg_pve_2.nii.gz highres2std.mat maske2.nii.gz std1mm2exfunc0.nii.gz std1mm2exfunc2.nii.gz
edge4.nii.gz fastsg_pveseg.nii.gz hr2exf.nii.gz maske3.nii.gz std1mm2exfunc1dil2.nii.gz std1mm2exfunc3dil2.nii.gz
edge5.nii.gz fastsg_seg.nii.gz hr2exfTMP.nii.gz maske4.nii.gz std1mm2exfunc1dil.nii.gz std1mm2exfunc3dil.nii.gz
fastsg_mixeltype.nii.gz features.csv hr2exfTMP.txt maske5.nii.gz std1mm2exfunc1.nii.gz std1mm2exfunc3.nii.gz
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