Hi Wolf,
The -edge option isn't one that I've seen used for many, many years, so I guess it just hasn't been kept updated.
We'll fix it for the next release.
All the best,
Mark
On 6 Jan 2014, at 02:23, wolf zinke <[log in to unmask]> wrote:
> Hi,
>
> I am playing around with mcflirt on a Debian system running FSL version 5.0.6.
>
> It seems that there is a nasty bug with the -edge option. This option will produce a file crefvol_<filename>. The problem is, that this name does not get rid of the preceding directory name in filename.
>
> It should produce something like $(dirname $filename)/crefvol_$(basename $filename), but insteads in does this: crefvol_$filename, resulting in an Image Exception. Thus, mcflirt with the -edge option works only when called from the same directory where file names are used with out path name.
>
> cheers,
> wolf
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