Hi to all and happy new year,
I have an additional question using fsl_sub and run_first_all:
I want to calculate hippocampal volumes on 50 patients.
Therefore I have written a bash script which looks like this:
for j in patientDir
do
cd $j
/usr/local/fsl/bin/run_first_all -s L_Hipp,R_Hipp -i mprage.nii -o fsl_seg_output.nii
done
But now I would like to complete this step (in the script) immediately by using
fslstats output -L_Hipp_corr.nii -V
which is not possible (in my opinion), as I do not know, when the run_first_all command has finished. And otherwise fslstats would result in an error, as the script starts fslstats without a regular input.
Therefore my question would be how could I run this for-loop on a multi-core-cluster (>50), so that each patient data can be processed separately ? Maybe I missed something how to use fsl_sub.
Many thanks,
Regards, Bernd
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