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FSL  December 2013

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Subject:

Re: Melodic (Feat) stops with "Fatal error occured"

From:

Matthias Heil <[log in to unmask]>

Reply-To:

FSL - FMRIB's Software Library <[log in to unmask]>

Date:

Tue, 17 Dec 2013 17:30:07 +0000

Content-Type:

multipart/mixed

Parts/Attachments:

Parts/Attachments

text/plain (22 lines) , 2nd.txt (69 lines) , single.txt (69 lines) , 4d.txt (69 lines)

Hello Matthew and Steve,

I'm using
5.0.5-1~nd70+1 of NeuroDebian of FSL.
(Just installing the newer one right now, mean 5.0.6... :)
Melodic still works with a data set I analysed some weeks ago.  
(Attached the fslhd output as 4d.txt.)

Following datasets don't work:
I attached the outputs of FSLHD, and I already compared the 2 series  
I'm concatenating (1st.txt and 2nd.txt). Only differences in
pixdim7
qto_xyz:1 til 3
sto_xyz:1 til 3

The single run with another multiband dataset also didnt work. There's  
single.txt attached.

Thanks!
Matthias



filename s4-aa32KMBEPI3mmTE25TR374s004a001.nii.gz sizeof_hdr 348 data_type INT16 dim0 4 dim1 74 dim2 74 dim3 48 dim4 1570 dim5 1 dim6 1 dim7 1 vox_units mm time_units s datatype 4 nbyper 2 bitpix 16 pixdim0 0.000000 pixdim1 3.000000 pixdim2 3.000000 pixdim3 3.000000 pixdim4 0.374000 pixdim5 1.000000 pixdim6 0.550001 pixdim7 73712.312500 vox_offset 352 cal_max 0.0000 cal_min 0.0000 scl_slope 1.000000 scl_inter 0.000000 phase_dim 0 freq_dim 0 slice_dim 0 slice_name Unknown slice_code 0 slice_start 0 slice_end 0 slice_duration 40.700039 time_offset 0.000000 intent Unknown intent_code 0 intent_name intent_p1 0.000000 intent_p2 0.000000 intent_p3 0.000000 qform_name Scanner Anat qform_code 1 qto_xyz:1 -2.993255 -0.174134 -0.100502 120.278564 qto_xyz:2 -0.155602 2.956039 -0.487462 -73.584641 qto_xyz:3 -0.127324 0.481153 2.958425 -34.028774 qto_xyz:4 0.000000 0.000000 0.000000 1.000000 qform_xorient Right-to-Left qform_yorient Posterior-to-Anterior qform_zorient Inferior-to-Superior sform_name Scanner Anat sform_code 1 sto_xyz:1 -2.993255 -0.174134 -0.100506 120.278564 sto_xyz:2 -0.155602 2.956039 -0.487462 -73.584641 sto_xyz:3 -0.127328 0.481153 2.958425 -34.028774 sto_xyz:4 0.000000 0.000000 0.000000 1.000000 sform_xorient Right-to-Left sform_yorient Posterior-to-Anterior sform_zorient Inferior-to-Superior file_type NIFTI-1+ file_code 1 descrip aux_file
filename s9-MEPI2mmTE262TR1286.nii.gz sizeof_hdr 348 data_type INT16 dim0 4 dim1 112 dim2 112 dim3 64 dim4 455 dim5 1 dim6 1 dim7 1 vox_units mm time_units s datatype 4 nbyper 2 bitpix 16 pixdim0 0.000000 pixdim1 2.000000 pixdim2 2.000000 pixdim3 2.000000 pixdim4 1.286000 pixdim5 1.000000 pixdim6 0.689998 pixdim7 62413.121094 vox_offset 352 cal_max 0.0000 cal_min 0.0000 scl_slope 1.000000 scl_inter 0.000000 phase_dim 0 freq_dim 0 slice_dim 0 slice_name Unknown slice_code 0 slice_start 0 slice_end 0 slice_duration 77.279755 time_offset 0.000000 intent Unknown intent_code 0 intent_name intent_p1 0.000000 intent_p2 0.000000 intent_p3 0.000000 qform_name Scanner Anat qform_code 1 qto_xyz:1 -1.996253 -0.041119 0.115255 120.379913 qto_xyz:2 -0.061528 1.965551 -0.364449 -79.195549 qto_xyz:3 0.105777 0.367311 1.963134 -46.276245 qto_xyz:4 0.000000 0.000000 0.000000 1.000000 qform_xorient Right-to-Left qform_yorient Posterior-to-Anterior qform_zorient Inferior-to-Superior sform_name Scanner Anat sform_code 1 sto_xyz:1 -1.996253 -0.041118 0.115255 120.379913 sto_xyz:2 -0.061528 1.965551 -0.364449 -79.195549 sto_xyz:3 0.105777 0.367311 1.963134 -46.276245 sto_xyz:4 0.000000 0.000000 0.000000 1.000000 sform_xorient Right-to-Left sform_yorient Posterior-to-Anterior sform_zorient Inferior-to-Superior file_type NIFTI-1+ file_code 1 descrip aux_file
filename 4Df019_187610_1_rest-001.nii sizeof_hdr 348 data_type INT16 dim0 4 dim1 64 dim2 64 dim3 40 dim4 187 dim5 1 dim6 1 dim7 1 vox_units mm time_units s datatype 4 nbyper 2 bitpix 16 pixdim0 0.000000 pixdim1 3.437500 pixdim2 3.437500 pixdim3 3.408000 pixdim4 1.000000 pixdim5 0.000000 pixdim6 0.000000 pixdim7 0.000000 vox_offset 352 cal_max 0.0000 cal_min 0.0000 scl_slope 1.000000 scl_inter 0.000000 phase_dim 0 freq_dim 0 slice_dim 0 slice_name Unknown slice_code 0 slice_start 0 slice_end 0 slice_duration 0.000000 time_offset 0.000000 intent Unknown intent_code 0 intent_name intent_p1 0.000000 intent_p2 0.000000 intent_p3 0.000000 qform_name Scanner Anat qform_code 1 qto_xyz:1 -3.437311 0.000000 -0.035692 110.529335 qto_xyz:2 -0.000691 3.436867 0.065421 -102.265526 qto_xyz:3 -0.035994 -0.065991 3.407185 -14.257918 qto_xyz:4 0.000000 0.000000 0.000000 1.000000 qform_xorient Right-to-Left qform_yorient Posterior-to-Anterior qform_zorient Inferior-to-Superior sform_name Scanner Anat sform_code 1 sto_xyz:1 -3.437311 0.000000 -0.035688 110.529335 sto_xyz:2 -0.000691 3.436867 0.065421 -102.265526 sto_xyz:3 -0.035990 -0.065991 3.407185 -14.257918 sto_xyz:4 0.000000 0.000000 0.000000 1.000000 sform_xorient Right-to-Left sform_yorient Posterior-to-Anterior sform_zorient Inferior-to-Superior file_type NIFTI-1+ file_code 1 descrip 3T 2D EP TR=2200ms/TE=30ms/FA=75deg 04-Mar-2010 17:21:19.475 Mosaic aux_file

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