Hi,
FSL wants the names to be of the form:
somename and somename_brain
So, in your case, H001_CAMH_brain and H001_CAMH would be the best naming to use.
That is, just rename H001_CAMH_bet to H001_CAMH_brain.
All the best,
Mark
On 5 Dec 2013, at 18:17, Colin Hawco <[log in to unmask]> wrote:
> I am trying to run Melodic on soem data, and wish to use linear and non-linear registration. I am loading the bet'd images as main structural images. However, I am getting an error that it cannot find the whole brain unbet's images, which must end in _brain.
>
> An example of a bet'd image name is:
> H001_CAMH_bet
>
> I have tried renaming the unbet's file H001_CAMH_bet_brain and H001_CAMH_brain, but Melodic is still not finding it. The 2 T1 images are in the same folder. I am not clear what FSL wants here.
>
> Any help appreciated.
>
> Thanks
> Colin
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