Dear Jesper,
thank you very much for this answer.
> The field that you can get as output would need to be combined
> with the rigid body parameters in the text file.
Could you tell me how the field should be combined with the parameters
from the text file?
Would the map then be in red/sec?
Thanks,
Jan
On 10/15/2013 11:22 AM, Jesper Andersson wrote:
> Dear Jan,
>
>>
>>
>> thank you for providing such great tools as topup and eddy!
>> I have 2 questions:
>>
>> 1. Are my data interpolated only once when I feed the results from topup into eddy?
>
> yes.
>
>>
>> 2. Is it possible to align my diffusion data with a T1 or T1 weighted scan without adding an additional interpolation step?
>> If not, would it theoretically be possible to extend eddy to do so with a reference image and affine transform? (That would be nice to know before I tried…)
>> I guess when combining the exported fields from eddy with an affine transform from flirt (would that work?)
>
> It is a good idea and something I will keep in mind for future releases. It is certainly possible, but it would take a bit of coding on your side. The field that you can get as output would need to be combined with the rigid body parameters in the text file.
>
>> then I would miss the correction of corrupted slices.
>
> The correction of corrupted slices is not "activated" in the current release (unless I have somehow done that by mistake) as we need to do more testing of that before we are happy with people using it. So you'll miss that right now anyway.
>
> Jesper
>
>
>>
>> Thanks,
>> Jan
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