Hi,
If you cannot get FNIRT to work with 2D data then you could try a work-around which was to build a 3D image from repeated copies of the same 2D slice. You can then extract a 2D result (image or warpfield) by taking out the central slice from the fake 3D image.
All the best,
Mark
On 26 Nov 2013, at 19:29, Dr. András Jakab <[log in to unmask]> wrote:
> Dear FSL list,
>
> Is it somehow possible to use FNIRT for registering 2D images (MRI file but only one slice, cardiac)? Apparently it does not work this way by default.
>
> Thank you.
> Regards,
> András
> -
> --
> Dr. med. Andras Jakab, MD. PhD.
> Marie Curie Post Doctoral Research Fellow
> Computational Image Analysis and Radiology Lab
> Medizinische Universität Wien
> Universitätsklinik für Radiologie und Nuklearmedizin
> Währinger Gürtel 18-20
> A-1090 Wien
> Cellular: +36305095083
> ----------------------------------
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