Good day!
I am refining what appears to be O-mannosylated protein structure.
In my hands Coot (0.7.1) does not form the SER-MAN bond automatically.
I made a SER-MAN.cif with jLigand, which takes care of the glycosidic bond. However, now the peptide bonds are not made to this custom residue (same chain, consecutive numbering).
Am I doing something wrong? How can I fix this?
Many thanks,
Dmitry
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