We invite applications to a groundbreaking PhD studentship, which provides dual-expertise training in the interdisciplinary environment of SynthSys, with experience at Simulistics Ltd. The project is fully-funded for UK and resident EU students, through a BBSRC industrial CASE studentship. Other projects are also available: http://bit.ly/1et6A80 and www.amillar.org
Understanding the growth of a plant in a changing environment is demanding, because plant development and metabolism respond sensitively to the local conditions. We have linked Crop Science and Systems Biology approaches to understand whole-plant growth, in a 'Framework Model' of the laboratory model plant Arabidopsis thaliana. The model predicts whole-plant biomass, from detailed molecular mechanisms, and was recently validated in independent experiments. This project will develop the next-generation model, both as a tool for fundamental biology, and to enable synthetic biology designs that take account of the complex regulation in the plant host. You will be trained to use a range of cutting-edge models, building on the concrete example of our Framework Model. The model will be extended to represent larger, molecular networks that control biomass under a wider range of environmental conditions, with international collaborators and Simulistics' Simile software. You will validate the model in new experiments, using Arabidopsis mutants and environmental control will test the model's predictive power, and to disseminate the models in the international research community.
Student profile: background in Biology, Geoscience, Agricultural Engineering or a suitably numerate discipline (e.g. computer science, engineering, applied maths or physics). Computer skills essential; programming experience desirable but not essential.
The supervisory team: Prof. Andrew Millar FRS, School of Biological Sciences (main supervisor); Prof. Vincent Danos, School of Informatics, Director of SynthSys; Dr. Robert Muetzelfeldt, Simulistics Ltd.
Only online applications, please, by 6 Jan 2014: http://www.ed.ac.uk/studying/postgraduate/degrees?id=12&cw_xml=details.php. Contact [log in to unmask] for informal enquiries.
Prof. Andrew Millar FRS
SynthSys
University of Edinburgh
C.H. Waddington Building
King's Buildings
Edinburgh EH9 3JD
UK
+44 131 651 3325
www.amillar.org; www.synthsys.ed.ac.uk
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The University of Edinburgh is a charitable body, registered in
Scotland, with registration number SC005336.
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