Hi list,
I'm running probtrackX for hard segmentation of subcortical structure.
I'd like to run this command with seed and target masks in MNI space.
I'm noting some errors in co-registration, and I can not solve them.
For this reason, I'd like to trasform the data.nii.gz. form diffusion to MNI space.
After I'd like to run bedpostX directly in MNI space.
Is it possible? When I run FLIRT I obtained nodif with 1 volume? Where is the other 15? In this way the bedpostX produces empty files.
Please, give me a responce.
Thank you very much.
Stefano
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