Dear FSL experts,
Apart from the seed mask, I am including two waypoint masks for tractography generation. All my masks are created in standard space. My question is, when I specify that the "seed space is not diffusion" and add the transformation matrix for standard to diffusion, does it apply the transformation to the waypoint masks? or are we required to transform them in to diffusion space manually?
The answer to my question may be evident, however I would really appreciate it if someone could verify it, just to make sure that I am not doing any mistakes.
Thank you,
Thushini
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