Please, have you patience.
I have created cortical label by freesurfer. Now I'd like to import them in FSL for probtrackX.
I have some questions, please.
A- Should I perform
tkregister2 --mov $SUBJECTS_DIR/john/mri/orig.mgz --targ $SUBJECTS_DIR/john/mri/rawavg.mgz --regheader --reg junk --fslregout freesurfer2struct.mat --noedit
convert_xfm -omat struct2freesurfer.mat -inverse freesurfer2struct.mat ...
for hard segmentation?
B-Should I run label2surf -s <surface> -o <outputsurface> -l <labels>? Is it right?
C- I do not understand how can I provide ascii list of label file?
D- Next, I should import outputsurface in FSL, trasform it in MNI space and run probtracX. Is it right?
Thanks in advance.
Best regards,
Stefano
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