-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Dear ,
does it obstruct your intention if you used the actual sequence of the
crystallised molecule? It is usually available through the PDB and
often in the SEQRES section of the pdb file itself. As far as I
understand this would be a work-around to the problem you describe,
would it not?
Best,
Tim
On 09/21/2013 05:42 PM, Mo Wong wrote:
> Hi,
>
> I'm trying to do sequence alignments that are generated using PDB
> files as the sequence source so are often missing residues with the
> sequence. Is there any way to run BLAST (or related server - not a
> local program) that accepts wildcards so I can keep the numbering
> in the resulting alignment in register with the PDB? I've Googled
> round, and I'm surprised that I can't find this addressed
> anywhere.
>
> Thanks!
>
- --
Dr Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen
GPG Key ID = A46BEE1A
-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1.4.14 (GNU/Linux)
Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/
iD8DBQFSPcE0UxlJ7aRr7hoRAh4sAKCi60ebFAVIpWhhg+XtYmN7HP78oACgtkov
d07jv7KBtoO6FqUw0rCD74Y=
=/7U3
-----END PGP SIGNATURE-----
|