Hi list,
I'm performing a probtrackx for hard segmentation of subcortical structure.
First, I have perfomed eddy current, bet and bedpostX.
Next, registration and run first tool of the structural images.
As target masks I'd import some cortical regions that I obtain from Freesurfer cortical parcellization.
I have binarized each of this cortical region and I have trasformed T1.mgz (FS format) in T1.nii.gz by mri_convert (FS).
When I use flsview I try to overlay the cortical masks on T1.nii.gz but the positioning of these masks on the structural image is wrong.
I note that when I use tkmedit (FS) all is right.
FS forum advise me to contact FSL mail list.
Please give me an help.
Thanks,
Stefano
|