Hello
The -g option will be supported in FSL 5.05. So far we had it included in internal releases.
Cheers
Stam
On 25 Sep 2013, at 16:40, Alan Anticevic wrote:
> Dear FSL Experts,
>
> I have tried running bedpostx using the following command, per Matt Glasser's recommendation (as this seems to have worked at WashU):
>
> /usr/local/fsl/bin/bedpostx /Volumes/drobo2a/Studies/Connectome/subjects/103414/hcp/103414/Diffusion/. -n 3 --rician -model 2 -g
> subjectdir is /Volumes/drobo2a/Studies/Connectome/subjects/103414/hcp/103414/Diffusion
> Making bedpostx directory structure
> Queuing preprocessing stages
> Queuing parallel processing stage
> 0 slices processed
> Queuing post processing stage
>
> After the the 2nd Queuing message the script just dies and does not continue.
>
> The Diffusion directory indeed has the grad_dev.nii.gz file.
>
> Of note, we ran a similar command on our HCP-style DWI data at Yale that does not have the associated grad_dev.nii.gz file. This runs perfectly fine.
>
> I would sincerely appreciate feedback regarding what may be going wrong.
>
> Thank you.
>
> Best,
> Alan
>
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