Running FSL under Ubuntu 13.04, when using run_first_all I am able to register a dataset but the segmentation of any particular structure (e.g. L_Hipp, R_Amyg etc) fails with the error:
model file not found
Error: cannot find image OUTPUT-L_Hipp_first
in the output.logs. The dataset has been tested on a different machine which ran successfully. Where should these model files be stored? Is this an environment variable that is not automatically set or a known fault when installing on Ubuntu?
Thanks
Mike
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