Hi Steve,
sorry, i might been somehow unclear.
while the raw data is perfectly registered to the t1 image, any additional image i try to register using the matfiles (there are two matfiles as output from this script;xxx.mat and xxxinit.mat; i think i tried any combination) output from the epi_reg script just looks enlarged (maybe factor 1.5) although they are some size/orientation/etc.. as the raw data.
Any ideas?
Thanks!
Maxim
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