I am trying to convert .spr/.sdt files in ImageJ to .hdr to be able to convert files in FSL to NIFTI. It appears that my functional data is fine. However when I view my anatomical data (only 4 slice coverage), FSL displays all 4 slices at the same time ie. first in top left corner, then in top right and bottom left and bottom right. Can anyone offer any tips on working in ImageJ or FSL to deal with this ie. have FSL display one slice at a time so that it will properly do the registration in my later steps?
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