Hi,
I ran probtrackx2 with the --omatrix2 option and then ran ccops afterwards. However, when I ran the ccops, I received this error: Could not open image ./fdt_matrix2. It appears to want a fdt_matrix2.nii.gz file instead of the ".dot". I recall in the past it did output fdt_matrix2 in the nii.gz format. Here are all the outputs from running probtrackx2 and --omatrix2: coords_for_fdt_matrix2, lookup_tractspace_fdt_matrix2.nii.gz, waytotal, fdt_matrix2.dot, probtrackx.log, fdt_paths.nii.gz, tract_space_coords_for_fdt_matrix2. Does anyone know what might be the issue?
Thanks
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