Dear FSLers,
I performed a MELODIC ICA analysis using FSL on resting state fMRI data. I
have two questions:
1. I am unable to easily find a way to overlay these maps on a standard
brain so that I can visualise exactly where they map in terms of brain
coordinates. For example, we can overlay spmT*.hdr files on any of the
standard templates in MRICron.
2. I also wish to perform some seed-based connectivity analyses (using AAL
seeds which I have available as .mat files) with this data. I am aware of
the FeatQuery tool for extracting the timeseries from the mask. What FSL
tools can I use to perform the correlation analysis?
Could anyone suggest the easiest way to do these things in FSL?
Thanks very much,
Rashmi
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Rashmi Jejurikar
Neuroimaging and Clinical Neuroscience Group
Institute for Stem Cell Biology and Regenerative Medicine (inStem)
National Centre for Biological Sciences (NCBS)
Bangalore, India 560065
Ph: +919538485547
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