Thank you Mark for your superfast reply -- it resolves the issue for me...
But am I taking your reply correct that output of randomize --help "isn't
right" either and lacking '=' signs? ;)
$> randomise --help 2>&1 | grep -e '--.*<'
--effective_design <design2.mat> alternative design for determining valid permutations
--seed <seed> specific integer seed for random number generator
--tfce_H <H> TFCE height parameter (default=2)
--tfce_E <E> TFCE extent parameter (default=0.5)
--tfce_C <C> TFCE connectivity (6 or 26; default=6)
Have a wonderful weekend?
On Fri, 09 Aug 2013, Mark Jenkinson wrote:
> Hi,
> It isn't right. From the "How do I get my command line to run?" entry on
> the main FSL FAQ
> (at [1]https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FSL%20FAQ ):
> • If using a double minus option that takes an argument, make sure you use
> an equals sign and no spaces (e.g. --start=2 ). This often causes the
> error Missing non-optional argument! when a space is used incorrectly.
> All the best,
> Mark
> On 9 Aug 2013, at 22:07, Yaroslav Halchenko <[2][log in to unmask]>
> wrote:
> I think the following cmdline is correctly composed but randomize
> complaints:
> *$> randomise -i all_FA_skeletonised -o tbss_FA -m mean_FA_skeleton_mask
> -d design.mat -t design.con -n 10000 --T2 -V --tfce_H 2 --tfce_E 0.5
> --tfce_C 6
> --tfce_H: Missing non-optional argument!
> try: randomise --help
> is that me or a bug?
--
Yaroslav O. Halchenko, Ph.D.
http://neuro.debian.net http://www.pymvpa.org http://www.fail2ban.org
Senior Research Associate, Psychological and Brain Sciences Dept.
Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755
Phone: +1 (603) 646-9834 Fax: +1 (603) 646-1419
WWW: http://www.linkedin.com/in/yarik
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