Hello,
I have found that pre-masking the structural images to standard space. I have run standard_space_roi <input> <output> -b .After that I have run the regular bet with -f and -g. I checked the result. It seems good.
Thank you all for your helping me.
Elveda
On Aug 11, 2013, at 4:42 PM, Niels Bergsland wrote:
> Your attachments didn't go through. The listserv only accepts files
> with relatively small file sizes. Can you upload your data to
> somewhere that is publicly available?
>
> On Sun, Aug 11, 2013 at 10:12 PM, Elveda Yildirim
> <[log in to unmask]> wrote:
>> Thank you all for your help.
>> I have tried with -f and -g first.I checked the result on fslview it seems
>> very bad.My original data is 1O_T1W.nii.gz .I attached this data and the
>> data I have applied bet.
>>
>> On Aug 11, 2013, at 3:25 PM, Niels Bergsland wrote:
>>
>> Can you post what you've tried and possibly upload a sample image?
>>
>> On Sunday, August 11, 2013, Elveda Yildirim wrote:
>>>
>>> Dear FSL Users,
>>>
>>> I am trying to remove non-brain tissue from neonatal structural image. I
>>> have tried many options for this, but I got very bad results. To have good
>>> result for neonatal data, I have to do something extra right? Does anyone
>>> help me?
>>>
>>> Thanks,
>>> Elveda
>>
>>
>>
>> --
>> Niels Bergsland
>> Integration Director
>> Buffalo Neuroimaging Analysis Center
>> 100 High St. Buffalo NY 14203
>> [log in to unmask]
>> (716) 859-7677
>>
>>
>
>
>
> --
> Niels Bergsland
> Integration Director
> Buffalo Neuroimaging Analysis Center
> 100 High St. Buffalo NY 14203
> [log in to unmask]
> (716) 859-7677
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