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Dear G,
if you only have the sequence, I suggest a BLAST search
(http://blast.ncbi.nlm.nih.gov/Blast.cgi), if you do have the
coordinates, you can use the DALI server
(http://ekhidna.biocenter.helsinki.fi/dali_server/start)
Regards,
Tim
On 08/22/2013 05:14 PM, Gloria Borgstahl wrote:
> We have a protein sequence that probably contains OB folds. What
> is the best way to search for the top structural homologs to this
> sequence in the pdb? G
>
- --
- --
Dr Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen
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