Hi Marta,
I had the same issue. Now I drag and drop the file containing both mags into a program called Osirix (free dicom viewer) and it automatically separates the two files. Then I export the files to my desired location and then use dcm2nii to convert.
Hope this helps!
Eleni
On Jul 8, 2013, at 9:28 AM, Marta Seretny <[log in to unmask]> wrote:
> Hi MH
>
> Again thank you for this reply.
>
> Yes it seems that each echo time is getting the same label: first echo1=1, first echo2=1, second echo1=2, second echo2=2 etc. So there are 72 different dicoms but only 32 unique labels.
>
> In someway I am not surprised that this is not getting split into 2 files by dcm2nii as I would guess their label or header is what identifies them as unique images. I will however endeavour to get in touch with Chris Roden as you suggest to see if he has any thoughts on this.
>
> I suspect that the way the scanner is set up to acquire and save this data may be part of the problem, but I do not know how to change this (current option selected is: Phas/Mag which generates the two folders I described in my first email, with one file in each).
>
> Any other thoughts on how I might get this sorted to get the split echo1 and echo2 files is much appreciated!
>
> Marta
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