Hello,
My 3rd level (across subjects) analysis won't complete and I can't figure out why. The error message, as reported bloew, is quite unspecific, and I couldn't identify the source. I've updated to the latest version of FSL, checked that all design.lcon were fine at the second level, and it still won't work. If anyone has any idea what I should check next, I'd be very grateful and happy to try it!
Best,
Stephane
**********************************
Progress Report / Log
Started at Mer 17 jul 2013 15:00:32 CEST
Feat main script
/bin/cp /tmp/feat_sFKrjA.fsf design.fsf
/usr/local/fsl/bin/feat_model design
mkdir .files;cp /usr/local/fsl/doc/fsl.css .files;ln -s /usr/local/fsl/doc/images .files/images
/usr/local/fsl/bin/fsl_sub -T 60 -l logs -N feat2_pre /usr/local/fsl/bin/feat /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/group/group_TLh.gfeat/design.fsf -D /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/group/group_TLh.gfeat -gfeatprep
syntax error in expression "1 + zstat1": variable references require preceding $
while executing
"if { [ catch {
for { set argindex 1 } { $argindex < $argc } { incr argindex 1 } {
switch -- [ lindex $argv $argindex ] {
-I {
incr argin..."
(file "/usr/local/fsl/bin/feat" line 119)
/usr/local/fsl/bin/fsl_sub -T 60 -l logs -N feat3a_flame /usr/local/fsl/bin/feat /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/group/group_TLh.gfeat/cope1.feat/design.fsf -D /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/group/group_TLh.gfeat/cope1.feat -I 1 -flame1
55585
/usr/local/fsl/bin/fsl_sub -T 60 -l logs -N feat3b_flame -j 55585 -t ./.flame
56000
/usr/local/fsl/bin/fsl_sub -T 60 -l logs -N feat3c_flame -j 56000 /usr/local/fsl/bin/feat /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/group/group_TLh.gfeat/cope1.feat/design.fsf -D /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/group/group_TLh.gfeat/cope1.feat -flame3
56018
/usr/local/fsl/bin/fsl_sub -T 60 -l logs -N feat4_post -j 56018 /usr/local/fsl/bin/feat /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/group/group_TLh.gfeat/cope1.feat/design.fsf -D /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/group/group_TLh.gfeat/cope1.feat -poststats 0 1
child process exited abnormally
while executing
"if { [ catch {
for { set argindex 1 } { $argindex < $argc } { incr argindex 1 } {
switch -- [ lindex $argv $argindex ] {
-I {
incr argin..."
(file "/usr/local/fsl/bin/feat" line 119)
/usr/local/fsl/bin/fsl_sub -T 1 -l logs -N feat5_stop /usr/local/fsl/bin/feat /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/group/group_TLh.gfeat/cope1.feat/design.fsf -D /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/group/group_TLh.gfeat/cope1.feat -stop
56227
/usr/local/fsl/bin/fsl_sub -T 1 -l logs -N feat5_stop -j 56227 /usr/local/fsl/bin/feat /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/group/group_TLh.gfeat/cope1.feat/design.fsf -D /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/group/group_TLh.gfeat -stop
Higher-level input files preparation
/usr/local/fsl/bin/featregapply /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/abrpe/donnees_irm/analyzed/abrpe_DSS.gfeat/cope1.feat
/usr/local/fsl/bin/featregapply /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/azizo/donnees_irm/analyzed/azizo_DSS.gfeat/cope1.feat
/usr/local/fsl/bin/featregapply /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/bazma/donnees_irm/analyzed/bazma_DSS.gfeat/cope1.feat
/usr/local/fsl/bin/featregapply /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/becgu/donnees_irm/analyzed/becgu_DSS.gfeat/cope1.feat
/usr/local/fsl/bin/featregapply /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/besch/donnees_irm/analyzed/besch_DSS.gfeat/cope1.feat
/usr/local/fsl/bin/featregapply /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/besoc/donnees_irm/analyzed/besoc_DSS.gfeat/cope1.feat
/usr/local/fsl/bin/featregapply /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/broke/donnees_irm/analyzed/broke_DSS.gfeat/cope1.feat
/usr/local/fsl/bin/featregapply /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/crumi/donnees_irm/analyzed/crumi_DSS.gfeat/cope1.feat
/usr/local/fsl/bin/featregapply /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/eyrca/donnees_irm/analyzed/eyrca_DSS.gfeat/cope1.feat
/usr/local/fsl/bin/featregapply /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/focem/donnees_irm/analyzed/focem_DSS.gfeat/cope1.feat
/usr/local/fsl/bin/featregapply /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/hinxa/donnees_irm/analyzed/hinxa_DSS.gfeat/cope1.feat
/usr/local/fsl/bin/featregapply /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/ibecl/donnees_irm/analyzed/ibecl_DSS.gfeat/cope1.feat
/usr/local/fsl/bin/featregapply /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/jabla/donnees_irm/analyzed/jabla_DSS.gfeat/cope1.feat
/usr/local/fsl/bin/featregapply /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/maexa/donnees_irm/analyzed/maexa_DSS.gfeat/cope1.feat
/usr/local/fsl/bin/featregapply /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/marma/donnees_irm/analyzed/marma_DSS.gfeat/cope1.feat
/usr/local/fsl/bin/featregapply /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/menca/donnees_irm/analyzed/menca_DSS.gfeat/cope1.feat
/usr/local/fsl/bin/featregapply /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/orfem/donnees_irm/analyzed/orfem_DSS.gfeat/cope1.feat
/usr/local/fsl/bin/featregapply /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/petni/donnees_irm/analyzed/petni_DSS.gfeat/cope1.feat
/usr/local/fsl/bin/featregapply /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/prapi/donnees_irm/analyzed/prapi_DSS.gfeat/cope1.feat
/usr/local/fsl/bin/featregapply /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/reika/donnees_irm/analyzed/reika_DSS.gfeat/cope1.feat
/usr/local/fsl/bin/featregapply /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/rigto/donnees_irm/analyzed/rigto_DSS.gfeat/cope1.feat
/usr/local/fsl/bin/featregapply /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/savau/donnees_irm/analyzed/savau_DSS.gfeat/cope1.feat
/usr/local/fsl/bin/featregapply /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/sebyo/donnees_irm/analyzed/sebyo_DSS.gfeat/cope1.feat
/usr/local/fsl/bin/fslmerge -t bg_image /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/abrpe/donnees_irm/analyzed/abrpe_DSS.gfeat/cope1.feat/example_func /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/azizo/donnees_irm/analyzed/azizo_DSS.gfeat/cope1.feat/example_func /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/bazma/donnees_irm/analyzed/bazma_DSS.gfeat/cope1.feat/example_func /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/becgu/donnees_irm/analyzed/becgu_DSS.gfeat/cope1.feat/example_func /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/besch/donnees_irm/analyzed/besch_DSS.gfeat/cope1.feat/example_func /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/besoc/donnees_irm/analyzed/besoc_DSS.gfeat/cope1.feat/example_func /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/broke/donnees_irm/analyzed/broke_DSS.gfeat/cope1.feat/example_func /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/crumi/donnees_irm/analyzed/crumi_DSS.gfeat/cope1.feat/example_func /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/eyrca/donnees_irm/analyzed/eyrca_DSS.gfeat/cope1.feat/example_func /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/focem/donnees_irm/analyzed/focem_DSS.gfeat/cope1.feat/example_func /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/hinxa/donnees_irm/analyzed/hinxa_DSS.gfeat/cope1.feat/example_func /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/ibecl/donnees_irm/analyzed/ibecl_DSS.gfeat/cope1.feat/example_func /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/jabla/donnees_irm/analyzed/jabla_DSS.gfeat/cope1.feat/example_func /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/maexa/donnees_irm/analyzed/maexa_DSS.gfeat/cope1.feat/example_func /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/marma/donnees_irm/analyzed/marma_DSS.gfeat/cope1.feat/example_func /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/menca/donnees_irm/analyzed/menca_DSS.gfeat/cope1.feat/example_func /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/orfem/donnees_irm/analyzed/orfem_DSS.gfeat/cope1.feat/example_func /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/petni/donnees_irm/analyzed/petni_DSS.gfeat/cope1.feat/example_func /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/prapi/donnees_irm/analyzed/prapi_DSS.gfeat/cope1.feat/example_func /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/reika/donnees_irm/analyzed/reika_DSS.gfeat/cope1.feat/example_func /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/rigto/donnees_irm/analyzed/rigto_DSS.gfeat/cope1.feat/example_func /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/savau/donnees_irm/analyzed/savau_DSS.gfeat/cope1.feat/example_func /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/sebyo/donnees_irm/analyzed/sebyo_DSS.gfeat/cope1.feat/example_func
/usr/local/fsl/bin/fslmaths bg_image -inm 1000 -Tmean bg_image -odt float
/usr/local/fsl/bin/fslmerge -t mask /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/abrpe/donnees_irm/analyzed/abrpe_DSS.gfeat/cope1.feat/mask /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/azizo/donnees_irm/analyzed/azizo_DSS.gfeat/cope1.feat/mask /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/bazma/donnees_irm/analyzed/bazma_DSS.gfeat/cope1.feat/mask /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/becgu/donnees_irm/analyzed/becgu_DSS.gfeat/cope1.feat/mask /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/besch/donnees_irm/analyzed/besch_DSS.gfeat/cope1.feat/mask /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/besoc/donnees_irm/analyzed/besoc_DSS.gfeat/cope1.feat/mask /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/broke/donnees_irm/analyzed/broke_DSS.gfeat/cope1.feat/mask /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/crumi/donnees_irm/analyzed/crumi_DSS.gfeat/cope1.feat/mask /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/eyrca/donnees_irm/analyzed/eyrca_DSS.gfeat/cope1.feat/mask /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/focem/donnees_irm/analyzed/focem_DSS.gfeat/cope1.feat/mask /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/hinxa/donnees_irm/analyzed/hinxa_DSS.gfeat/cope1.feat/mask /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/ibecl/donnees_irm/analyzed/ibecl_DSS.gfeat/cope1.feat/mask /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/jabla/donnees_irm/analyzed/jabla_DSS.gfeat/cope1.feat/mask /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/maexa/donnees_irm/analyzed/maexa_DSS.gfeat/cope1.feat/mask /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/marma/donnees_irm/analyzed/marma_DSS.gfeat/cope1.feat/mask /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/menca/donnees_irm/analyzed/menca_DSS.gfeat/cope1.feat/mask /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/orfem/donnees_irm/analyzed/orfem_DSS.gfeat/cope1.feat/mask /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/petni/donnees_irm/analyzed/petni_DSS.gfeat/cope1.feat/mask /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/prapi/donnees_irm/analyzed/prapi_DSS.gfeat/cope1.feat/mask /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/reika/donnees_irm/analyzed/reika_DSS.gfeat/cope1.feat/mask /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/rigto/donnees_irm/analyzed/rigto_DSS.gfeat/cope1.feat/mask /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/savau/donnees_irm/analyzed/savau_DSS.gfeat/cope1.feat/mask /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/sebyo/donnees_irm/analyzed/sebyo_DSS.gfeat/cope1.feat/mask
/usr/local/fsl/bin/fslmaths mask -Tmin mask
/usr/local/fsl/bin/fslmerge -t mean_func /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/abrpe/donnees_irm/analyzed/abrpe_DSS.gfeat/cope1.feat/mean_func /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/azizo/donnees_irm/analyzed/azizo_DSS.gfeat/cope1.feat/mean_func /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/bazma/donnees_irm/analyzed/bazma_DSS.gfeat/cope1.feat/mean_func /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/becgu/donnees_irm/analyzed/becgu_DSS.gfeat/cope1.feat/mean_func /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/besch/donnees_irm/analyzed/besch_DSS.gfeat/cope1.feat/mean_func /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/besoc/donnees_irm/analyzed/besoc_DSS.gfeat/cope1.feat/mean_func /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/broke/donnees_irm/analyzed/broke_DSS.gfeat/cope1.feat/mean_func /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/crumi/donnees_irm/analyzed/crumi_DSS.gfeat/cope1.feat/mean_func /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/eyrca/donnees_irm/analyzed/eyrca_DSS.gfeat/cope1.feat/mean_func /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/focem/donnees_irm/analyzed/focem_DSS.gfeat/cope1.feat/mean_func /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/hinxa/donnees_irm/analyzed/hinxa_DSS.gfeat/cope1.feat/mean_func /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/ibecl/donnees_irm/analyzed/ibecl_DSS.gfeat/cope1.feat/mean_func /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/jabla/donnees_irm/analyzed/jabla_DSS.gfeat/cope1.feat/mean_func /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/maexa/donnees_irm/analyzed/maexa_DSS.gfeat/cope1.feat/mean_func /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/marma/donnees_irm/analyzed/marma_DSS.gfeat/cope1.feat/mean_func /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/menca/donnees_irm/analyzed/menca_DSS.gfeat/cope1.feat/mean_func /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/orfem/donnees_irm/analyzed/orfem_DSS.gfeat/cope1.feat/mean_func /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/petni/donnees_irm/analyzed/petni_DSS.gfeat/cope1.feat/mean_func /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/prapi/donnees_irm/analyzed/prapi_DSS.gfeat/cope1.feat/mean_func /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/reika/donnees_irm/analyzed/reika_DSS.gfeat/cope1.feat/mean_func /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/rigto/donnees_irm/analyzed/rigto_DSS.gfeat/cope1.feat/mean_func /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/savau/donnees_irm/analyzed/savau_DSS.gfeat/cope1.feat/mean_func /Users/stephanejacobs/Steph/data/projects/extinction/extinction_visuotactile/irm/donnees/subjects/sebyo/donnees_irm/analyzed/sebyo_DSS.gfeat/cope1.feat/mean_func
/usr/local/fsl/bin/fslmaths mean_func -Tmean mean_func
syntax error in expression "1 + zstat1": variable references require preceding $
while executing
"if { [ catch {
for { set argindex 1 } { $argindex < $argc } { incr argindex 1 } {
switch -- [ lindex $argv $argindex ] {
-I {
incr argin..."
(file "/usr/local/fsl/bin/feat" line 119)
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