Hey,
since my bash-scripting skills are even worse than those for matlab, i've tried to run it with the later one
refvol = 005.nii.gz
for i = 1:220
% refvol = 110
mat_in = mat{1,i};
mat_ref = mat{1,110};
% rmsdiff matrixfile1 matrixfile2 refvol
rms_in = ['$FSLDIR/bin/rmsdiff ', mat1, ' ', mat_ref, ' ', refvol];
[~,rms_out] = system(rms_in);
rms_out_num(i) = str2double(rms_out);
end
Thank you for your help
best regards
Michael
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