Hey Steve,
This is what I see in drA
/Users/samansarraf/Downloads/FSL/fsl/bin/fslmaths /Users/samansarraf/Desktop/Alzh_Nifti/AD_NIFTI/AD_data/4564/20090220_124047MWalzheimersJAN0910s011a1001_ADRS2mm.ica/reg_standard/filtered_func_data -Tstd -bin GROTAD/mask_00000 -odt char
/Users/samansarraf/Downloads/FSL/fsl/bin/fslmaths /Users/samansarraf/Desktop/Alzh_Nifti/AD_NIFTI/AD_data/4599/20090304_104451MWalzheimersJAN0910s011a1001_ADRS2mm.ica/reg_standard/filtered_func_data -Tstd -bin GROTAD/mask_00001 -odt char
/Users/samansarraf/Downloads/FSL/fsl/bin/fslmaths /Users/samansarraf/Desktop/Alzh_Nifti/AD_NIFTI/AD_data/4618/20090309_145615ALZHEIMERSSTUDY5MAR0s010a1001_ADRS2mm.ica/
... to the end
I checked all drA.eXXXX.X, they are empty!
I also checked all drA.oXXXX.X, all of them are empty!
drB.e(o)XXXX. are empty too.
This is drC:
/Users/samansarraf/Downloads/FSL/fsl/bin/fsl_glm -i /Users/samansarraf/Desktop/Alzh_Nifti/AD_NIFTI/AD_data/4564/20090220_124047MWalzheimersJAN0910s011a1001_ADRS2mm.ica/reg_standard/filtered_func_data -d /Users/samansarraf/Desktop/ADRS2mm.gica/groupmelodic.ica/melodic_IC -o GROTAD/dr_stage1_subject00000.txt --demean -m GROTAD/mask ; /Users/samansarraf/Downloads/FSL/fsl/bin/fsl_glm -i /Users/samansarraf/Desktop/Alzh_Nifti/AD_NIFTI/AD_data/4564/20090220_124047MWalzheimersJAN0910s011a1001_ADRS2mm.ica/reg_standard/filtered_func_data -d GROTAD/dr_stage1_subject00000.txt -o GROTAD/dr_stage2_subject00000 --out_z=GROTAD/dr_stage2_subject00000_Z --demean -m GROTAD/mask --des_norm ; /Users/samansarraf/Downloads/FSL/fsl/bin/fslsplit GROTAD/dr_stage2_subject00000 GROTAD/dr_stage2_subject00000_ic
/Users/samansarraf/Downloads/FSL/fsl/bin/fsl_glm -i /Users/samansarraf/Desktop/Alzh_Nifti/AD_NIFTI/AD_data/4599/20090304_104451MWalzheimersJAN0910s011a1001_ADRS2mm.ica/reg_standard/filtered_func_data -d /Users/samansarraf/Desktop/ADRS2mm.gica/groupmelodic.ica/melodic_IC -o GROTAD/dr_stage1_subject00001.txt --demean -m GROTAD/mask ; /Users/samansarraf/Downloads/FSL/fsl/bin/fsl_glm -i /Users/samansarraf/Desktop/Alzh_Nifti/AD_NIFTI/AD_data/4599/20090304_104451MWalzheimersJAN0910s011a1001_ADRS2mm.ica/reg_standard/filtered_func_data -d GROTAD/dr_stage1_subject00001.txt -o GROTAD/dr_stage2_subject00001 --out_z=GROTAD/dr_stage2_subject00001_Z --demean -m GROTAD/mask --des_norm ; /Users/samansarraf/Downloads/FSL/fsl/bin/fslsplit GROTAD/dr_stage2_subject00001 GROTAD/dr_stage2_subject00001_ic
... to the end
And this is drC.eXXXX.X
ols_dof: Error in determining the trace, resorting to basic calculation
/bin/sh: line 1: 10307 Segmentation fault: 11 /Users/samansarraf/Downloads/FSL/fsl/bin/fsl_glm -i /Users/samansarraf/Desktop/Alzh_Nifti/AD_NIFTI/AD_data/4564/20090220_124047MWalzheimersJAN0910s011a1001_ADRS2mm.ica/reg_standard/filtered_func_data -d /Users/samansarraf/Desktop/ADRS2mm.gica/groupmelodic.ica/melodic_IC -o GROTAD/dr_stage1_subject00000.txt --demean -m GROTAD/mask
Could not open matrix file GROTAD/dr_stage1_subject00000.txt
ols_dof: Error in determining the trace, resorting to basic calculation
Cannot open volume GROTAD/dr_stage2_subject00000 for reading!
This issue is repeated in each drC.eXXXX.X!!!!!
And drC.oXXXX.X s are empty.
I appreciate if you can share your ideas with me.
Best,
Sam.
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