Dear FSL developers/users
I was working with TBSS in FSL, it seems that in voxelwise statistics on the skeletonised FA data, the tbss_maxc_tstat1 and tbss_maxc_tstat2 images were not generated.
However, I have tbss_tstat1, tbss_tstat2, tbss_clustere_corrp_tstat1.nii, and tbss_clustere_corrp_tstat2.nii already generated.
I copied the instruction up to voxelwise statistics:
tbss_1_preproc *
tbss_2_reg -T
tbss_3_postreg -S
tbss_4_prestats 0.2
cd stats
design_ttest2 design 23 3
fslview all_FA_skeletonised.nii.gz
randomise -i all_FA_skeletonised.nii.gz -o tbss -m mean_FA_skeleton_mask -d design.mat -t design.con -n 5000 -c 3 -V
fslview MNI152 mean_FA_skeleton -l Green -b 2000,7000 tbss_maxc_tstat1 -l Red-Yellow -b 0.95,1
OR
tbss_fill tbss_maxc_tstat1 0.95 mean_FA tbss_fill fslview mean_FA -b 0,6000 mean_FA_skeleton -l Green -b 2000,7000 tbss_fill -l Red-Yellow
Thanks a lot for your kind help.
Best regards
Mohamad-Reza Nazem-Zadeh
Research Scientist/Instructor
Henry Ford Hospital, Detroit, MI
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