Hi Alan
Have a a look at
http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/fdt/UserGuide#Processing_pipeline
Cheers
Stam
On 13 Jun 2013, at 16:09, Alan Francis wrote:
> Hi FSL folk:
>
> I have run DTI FIT on a set of images and it all went well. Now I am trying to run Bedpostx on the same brains. From your previous posts I read that Bedpostx runs only when the following files are available:
>
> 1. bvecs
> 2.bvals
> 3. nodif_brain_mask_nii.gz
> 4. data.nii.gz
>
> My question is where does one find the nodif_brain_mask_nii.gz? Also is the term "data" generic for the coregistered and DTI fitted image?
>
> thanks,
>
> Alan Francis
> Martinos Center, MGH
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