Dear masaki,
it is --datain, not --datatin.
Jesper
On 28 Jun 2013, at 08:19, masaki YOSHIDA wrote:
> Dear FSL expert
>
> I'm new for topup/applytopup function.
>
> After topup execution, when I run appytopup as follow,,,,,,
>
> ---------------------------------------------------
> bash-3.2$ ls
> b0_blip_down.nii.gz both_b0.topup_log
> b0_blip_up.nii.gz my_acq_param.txt
> blip_down.nii.gz my_topup_results_fieldcoef.nii.gz
> blip_up.nii.gz my_topup_results_movpar.txt
> both_b0.nii.gz
> bash-3.2$ applytopup --imain=blip_up,blip_down --inindex=1,2
> --datatin=my_acq_param.txt --topup=my_topup_result --out=my_topup_image
>
> Part of FSL (build 504)
> applytopup (Version 1.0)
> Copyright(c) 2009, University of Oxford (Jesper Andersson)
>
> Usage:
> applytopup -in=topdn,botup --topup=mytu --inindex=1,2 --out=hifi
> applytopup -in=topdn --topup=mytu --inindex=1 --method=jac --interp=spline
> --out=hifi
>
> --datatin: Option doesn't exist!
>
> ---------------------------------------------------------------
>
> I simply follow example running topup followed by appytopup example
> running in the wiki
> (http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/TOPUP/ExampleTopupFollowedByApplytopup#Example_of_running_topup_followed_by_applytopup
> )
>
> Can I have some solution?
>
> Thank You in advance
>
> Masaki Yoshida MD
> Tokyo Tokyu Hospital
>
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