Dear All,
We recently had a problem with running bedpostX via SGE. The problem was
that a number of *HUGE* folders were left over in our subject.bedpostX
folders after processing, which caused our file system to fill up.
FYI we were running 16 subjects with default bedpostX options. Before we
started the process there was 2TB of free space on the system, and about
8 hours into processing we were down to 0bytes.
The problem was that the logs folder totalled ~268GB per subject, and
contained several huge logfiles (10s of GBs each).
The raw data were not huge, 2mm isotropic (96x96), 50 slices, b=0 (x1),
b=1000 (64 directions), 2 averages.
Any suggestions on how to trouble shoot this so I can avoid the
situation happening again would be much appreciated.
Cheers, Jon
--
Jonathan Brooks (PhD)
CRiCBristol Senior Research Fellow
University of Bristol, St Michael's Hill, Bristol, UK
T: +44(0)117-342-1512 W: http://www.cricbristol.ac.uk
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