Try binarizing your maps first (e.g., fslmaths FA -thr .95 -bin FA_mask).
Joe
-----Original Message-----
From: FSL - FMRIB's Software Library [mailto:[log in to unmask]] On Behalf Of Derek Archer
Sent: Thursday, May 2, 2013 11:46 AM
To: [log in to unmask]
Subject: [FSL] 3dviewer - probtrackx output
FSL Users,
I am wondering if anyone has been able to get DTI FA maps (not a standard) to appear in 3dviewer. I am able to get the probtrackx output to appear, but I would like to overlay these on my FA map in 3d. Anyone had any luck?
Thanks,
Derek
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