There was indeed a bug when trying to swap the map colours after running
refmac, but only in the pythonic version (*). However, you appear to be
using the scheme version and this seems to be OK. Maybe there is problem
earlier in your .coot file and the command doesnt even get executed.
What does the console output say upon start-up? Have you tried the
command in the Scheme Scripting window to see if it works from there?
(we can discuss this in more detail off-list).
B
(*) Fixed in revision 4651
> On a related note..I do have the following setting
> (set-keep-map-colour-after-refmac 1) in my .coot file , but it does not
> seem to be getting picked up and the refmac produced map color does
> change after the run and the . I am running coot version
>
> 0.7.1-pre (revision 4549) [with guile 1.8.8 embedded] [with python
> 2.7.0 embedded]
>
> My setting /home/hari/.coot reads..
>
> (set-keep-map-colour-after-refmac 1)
>
> Any ideas on what I am doing wrong.
> Thanks again
> Hari
>
>
>
> On Tue, May 21, 2013 at 5:31 AM, Bernhard Lohkamp
> <[log in to unmask] <mailto:[log in to unmask]>> wrote:
>
>
> Hi Hari,
>
> sorry for getting back late. There was indeed a bug (in the scheme
> scripting). This is fixed in r4647 (just downloading refmac.scm from the
> repository should be ok).
>
> B
>
> > Hi all,
> > I generally run refmac from inside coot.
> >
> > The "older" coot version would automatically pick the newest maps
> that
> > resulted from refmac as the map to use for refinement..so it would go
> > from one FWT map (say map 0) to the newest FWT (map 2) map that
> > resulted after refmac..
> >
> > However the auto picking of the newest map is no longer happening
> >
> > Is there someplace in the .coot settings file I can use to set
> the old
> > coot behavior and I am hoping that there is a setting that will
> pick the
> > newest map as the one to be used.
> >
> > Thanks for your help
> >
> > Hari
> >
> >
>
>
> --
> ***************************************************
>
> Dr. Bernhard Lohkamp
> Assistant Professor
> Div. Molecular Structural Biology
> Dept. of Medical Biochemistry and Biophysics (MBB)
> Karolinska Institutet
> S-17177 Stockholm
> Sweden
>
> phone: (+46) 08-52487651 <tel:%28%2B46%29%2008-52487651>
> fax: (+46) 08-327626 <tel:%28%2B46%29%2008-327626>
> email: [log in to unmask] <mailto:[log in to unmask]>
>
>
--
***************************************************
Dr. Bernhard Lohkamp
Assistant Professor
Div. Molecular Structural Biology
Dept. of Medical Biochemistry and Biophysics (MBB)
Karolinska Institutet
S-17177 Stockholm
Sweden
phone: (+46) 08-52487651
fax: (+46) 08-327626
email: [log in to unmask]
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