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CCP4BB  May 2013

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Subject:

Re: showing electron density on an ipad

From:

David Roberts <[log in to unmask]>

Reply-To:

David Roberts <[log in to unmask]>

Date:

Thu, 2 May 2013 09:11:27 -0400

Content-Type:

text/plain

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text/plain (75 lines)

Sorry - I went back to look at that.  The ipad app for pymol does not 
have an option to load a map.  You can only load structures.  I like 
that you can load your own structures (from a dropbox folder), that's 
nice.  It's very powerful, and I can do a lot with it, but I would like 
to show electron density and can't find a way.

I got good suggestions yesterday.  Imolview does work well for loading 
pdb files.  I don't have a way to get the browser that goes with it to 
run on my linux box. I tried it, but was unsuccessful, so I don't know 
if it displays density or not.  The CueMol does not show density.  So, 
both of these are nice for pdb files (I like Imolview better), but 
neither will easily show electron density.

I just want an app that will display a pdb file and a map file.  I can 
convert maps to whatever format is necessary (as long as it's 
crystallographic).  That I can't seem to find.

No worries.  Thanks for all the suggestions

Dave

On 5/2/2013 2:35 AM, Tim Gruene wrote:
> -----BEGIN PGP SIGNED MESSAGE-----
> Hash: SHA1
>
> Hi Dave,
>
> could you explain what you mean by "it doesn't work"? I understand
> that you convert a ccp4 mtz-file to ccp4 map format (which pymol can
> read) and load it into pymol on your ipad which does not display. Is
> this correct? If so, do you get any error messages?
>
> Could you use coot instead?
>
> Best,
> Tim
>
> On 05/01/2013 09:56 PM, David Roberts wrote:
>> Hello all,
>>
>> So, I find an ipad is a wonderful device for teaching (any tablet
>> really - but I'm partial to the ipad).  I can project it in a
>> classroom, run pymol and a few other chemistry/biochemistry things,
>> and really get the students interested in these subjects easily.  I
>> actually don't have a laptop - and our classrooms are such that
>> there are computers connected to the projectors but they have
>> standard University software packages installed on them.
>>
>> It would be very helpful if I could just display electron density
>> using an ipad.  The pymol app will load a map (it is an option) -
>> but when I take a map from my linux machines it doesn't work.  Any
>> thoughts here? Has anybody done this
>>
>> Thanks
>>
>> Dave
>>
> - -- 
> - --
> Dr Tim Gruene
> Institut fuer anorganische Chemie
> Tammannstr. 4
> D-37077 Goettingen
>
> GPG Key ID = A46BEE1A
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> Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/
>
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> =QOT4
> -----END PGP SIGNATURE-----

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