JiscMail Logo
Email discussion lists for the UK Education and Research communities

Help for CCP4BB Archives


CCP4BB Archives

CCP4BB Archives


CCP4BB@JISCMAIL.AC.UK


View:

Message:

[

First

|

Previous

|

Next

|

Last

]

By Topic:

[

First

|

Previous

|

Next

|

Last

]

By Author:

[

First

|

Previous

|

Next

|

Last

]

Font:

Proportional Font

LISTSERV Archives

LISTSERV Archives

CCP4BB Home

CCP4BB Home

CCP4BB  May 2013

CCP4BB May 2013

Options

Subscribe or Unsubscribe

Subscribe or Unsubscribe

Log In

Log In

Get Password

Get Password

Subject:

Re: Fwd: Re: [ccp4bb] reference for "true multiplicity"?

From:

Jrh <[log in to unmask]>

Reply-To:

Jrh <[log in to unmask]>

Date:

Wed, 15 May 2013 07:46:54 +0100

Content-Type:

text/plain

Parts/Attachments:

Parts/Attachments

text/plain (117 lines)

Good morning Colin (from this side of the pond),
I never liked the word redundancy. Multiplicity is a however a good word for multiple measurements. So, Ethan, what does someone in the USA say when made redundant ie out of a job? Surely not that they are now a useful surplus for the US economy of the future? 

Re benefits of multiple measurements I would add:-
Any time dependent related variations such as :-
X-ray beam rapid variations;
Crystal movements;
Variations in cold stream flow;
??
??

More esoterically perhaps extinction for very strong reflections in bigger crystal cases with longer Xray wavelengths. This would be data sets where multiple crystals are needed. This however I don't think affects more than a handful of reflections.

Just my two UK pennies worth,
John


Prof John R Helliwell DSc 
 
 

On 14 May 2013, at 21:58, Colin Nave <[log in to unmask]> wrote:

> Yes, a good summary.
> The use of the term redundancy (real or otherwise!) in crystallography is potentially misleading as the normal usages means superfluous/ surplus to requirements.  The closest usage I can find from elsewhere is in information theory where it is applied for purposes of error detection when communicating over a noisy channel. Seems similar to the crystallographic use.
> 
> The more relevant point is what sort of errors would be mitigated by having different paths through the crystal. The obvious ones are absorption errors and errors in detector calibration. Inverse beam methods can mitigate these by ensuring the systematic errors are similar for the reflections being compared. However, my interpretation of the Acta D59 paper is that it is accepted that systematic errors are present and, by making multiple measurements under different conditions, the effect of these systematic errors will be minimised.
> 
> Can anyone suggest other sources of error which would be mitigated by having different paths through the crystal. I don't think radiation damage (mentioned by several people) is one.
> 
> Colin
> 
> From: CCP4 bulletin board [mailto:[log in to unmask]] On Behalf Of Frank von Delft
> Sent: 14 May 2013 14:23
> To: ccp4bb
> Subject: [ccp4bb] Fwd: Re: [ccp4bb] reference for "true multiplicity"?
> 
> George points out that the quote I referred to did not make it to the BB -- here we go, read below and learn, it is a most succinct summary.
> phx
> 
> -------- Original Message --------
> Subject:
> 
> Re: [ccp4bb] reference for "true multiplicity"?
> 
> Date:
> 
> Tue, 14 May 2013 09:25:22 +0100
> 
> From:
> 
> Frank von Delft <[log in to unmask]><mailto:[log in to unmask]>
> 
> To:
> 
> George Sheldrick <[log in to unmask]><mailto:[log in to unmask]>
> 
> 
> Thanks!  It's the Acta D59 p688 I was thinking of - start of discussion:
> "The results presented here show that it is possible to solve
> protein structures using the anomalous scattering from native
> S atoms measured on a laboratory instrument in a careful but
> relatively routine manner, provided that a sufficiently high
> real redundancy is obtained (ranging from 16 to 44 in these
> experiments). Real redundancy implies measurement of
> equivalent or identical re¯ections with different paths through
> the crystal, not just repeated measurements; this is expedited
> by high crystal symmetry and by the use of a three-circle (or )
> goniometer."
> Wise words...
> 
> phx
> 
> 
> On 14/05/2013 08:06, George Sheldrick wrote:
> Dear Frank,
> 
> We did extensive testing of this approach at the beginning of this millenium - see
> Acta Cryst. D59 (2003) 393 and 688 - but never claimed that it was our idea.
> 
> Best wishes,
> George
> 
> On 05/14/2013 06:50 AM, Frank von Delft wrote:
> 
> Hi, I'm meant to know this but I'm blanking, so I'll crowdsource instead:
> 
> Anybody know a (the) reference where it was showed that the best SAD data is obtained by collecting multiple revolutions at different crystal offsets (kappa settings)?  It's axiomatic now (I hope!), but I remember seeing someone actually show this.  I thought Sheldrick early tweens, but PubMed is not being useful.
> 
> (Oh dear, this will unleash references from the 60s, won't it.)
> 
> phx
> 
> 
> 
> 
> 
> 
> -- 
> 
> This e-mail and any attachments may contain confidential, copyright and or privileged material, and are for the use of the intended addressee only. If you are not the intended addressee or an authorised recipient of the addressee please notify us of receipt by returning the e-mail and do not use, copy, retain, distribute or disclose the information in or attached to the e-mail.
> 
> Any opinions expressed within this e-mail are those of the individual and not necessarily of Diamond Light Source Ltd. 
> 
> Diamond Light Source Ltd. cannot guarantee that this e-mail or any attachments are free from viruses and we cannot accept liability for any damage which you may sustain as a result of software viruses which may be transmitted in or with the message.
> 
> Diamond Light Source Limited (company no. 4375679). Registered in England and Wales with its registered office at Diamond House, Harwell Science and Innovation Campus, Didcot, Oxfordshire, OX11 0DE, United Kingdom
> 
> 
> 
> 
> 
> 
> 
> 
> 

Top of Message | Previous Page | Permalink

JiscMail Tools


RSS Feeds and Sharing


Advanced Options


Archives

May 2024
April 2024
March 2024
February 2024
January 2024
December 2023
November 2023
October 2023
September 2023
August 2023
July 2023
June 2023
May 2023
April 2023
March 2023
February 2023
January 2023
December 2022
November 2022
October 2022
September 2022
August 2022
July 2022
June 2022
May 2022
April 2022
March 2022
February 2022
January 2022
December 2021
November 2021
October 2021
September 2021
August 2021
July 2021
June 2021
May 2021
April 2021
March 2021
February 2021
January 2021
December 2020
November 2020
October 2020
September 2020
August 2020
July 2020
June 2020
May 2020
April 2020
March 2020
February 2020
January 2020
December 2019
November 2019
October 2019
September 2019
August 2019
July 2019
June 2019
May 2019
April 2019
March 2019
February 2019
January 2019
December 2018
November 2018
October 2018
September 2018
August 2018
July 2018
June 2018
May 2018
April 2018
March 2018
February 2018
January 2018
December 2017
November 2017
October 2017
September 2017
August 2017
July 2017
June 2017
May 2017
April 2017
March 2017
February 2017
January 2017
December 2016
November 2016
October 2016
September 2016
August 2016
July 2016
June 2016
May 2016
April 2016
March 2016
February 2016
January 2016
December 2015
November 2015
October 2015
September 2015
August 2015
July 2015
June 2015
May 2015
April 2015
March 2015
February 2015
January 2015
December 2014
November 2014
October 2014
September 2014
August 2014
July 2014
June 2014
May 2014
April 2014
March 2014
February 2014
January 2014
December 2013
November 2013
October 2013
September 2013
August 2013
July 2013
June 2013
May 2013
April 2013
March 2013
February 2013
January 2013
December 2012
November 2012
October 2012
September 2012
August 2012
July 2012
June 2012
May 2012
April 2012
March 2012
February 2012
January 2012
December 2011
November 2011
October 2011
September 2011
August 2011
July 2011
June 2011
May 2011
April 2011
March 2011
February 2011
January 2011
December 2010
November 2010
October 2010
September 2010
August 2010
July 2010
June 2010
May 2010
April 2010
March 2010
February 2010
January 2010
December 2009
November 2009
October 2009
September 2009
August 2009
July 2009
June 2009
May 2009
April 2009
March 2009
February 2009
January 2009
December 2008
November 2008
October 2008
September 2008
August 2008
July 2008
June 2008
May 2008
April 2008
March 2008
February 2008
January 2008
December 2007
November 2007
October 2007
September 2007
August 2007
July 2007
June 2007
May 2007
April 2007
March 2007
February 2007
January 2007


JiscMail is a Jisc service.

View our service policies at https://www.jiscmail.ac.uk/policyandsecurity/ and Jisc's privacy policy at https://www.jisc.ac.uk/website/privacy-notice

For help and support help@jisc.ac.uk

Secured by F-Secure Anti-Virus CataList Email List Search Powered by the LISTSERV Email List Manager