Dear FSL experts,
I’m trying to use FLIRT to register some EPI images to the corresponding individual T1 images (one example in the links below). However, my EPI slice prescription was significantly angled relative to the axial orientation (of the T1 images). I believe that, for this reason, I am not succeeding in obtaining a good registration. I have already tried some different options, including using 6 DOF or BBR, and using -usesqform –applyxfm.
I would be grateful for your help!
Thanks for the attention.
Best regards,
Joana Pinto
https://www.dropbox.com/s/6a9dr4v39gwwc36/example_func.nii.gz
https://www.dropbox.com/s/fvykd20zdic39qu/MPRAGE_reori_brain.nii.gz
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