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CCP4BB  April 2013

CCP4BB April 2013

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Subject:

Re: popular piece on X-ray crystallography

From:

Colin Nave <[log in to unmask]>

Reply-To:

[log in to unmask]

Date:

Sun, 21 Apr 2013 13:38:10 +0000

Content-Type:

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text/plain (227 lines)

James's original rather short comment about Debye's key observation in 1915 was clearly casting in to the CCP4BB fish pond to see who would bite. I guess I was that fish.

There seems to be some  confusion over dates (1914 or 1915) but this is not important. I agree that determining the size of atoms was significant but stating that it ended determinism is pushing it a bit. I don't think Debye, or anyone else at the time, recognised it as ending determinism. In fact, according to a recent book (Bohr and the Quantum Atom: The Bohr Model of Atomic Structure 1913-1925. Helge Kragh - around page 130) Debye adopted a classical view of atomic orbitals in disagreement with Bohr. It seems that Debye believed up to about 1917 that his failure to observe these orbitals via x-ray scattering was due to inadequacies in his equipment. Max Born is often credited with ending determinism - for example annoying both Schrodinger and Einstein with his interpretation of Schrodinger's wave equation as the probability of finding a particle in a particular position.

Debye's Wikipedia entry is short on science and long on controversy. He clearly needs a sympathetic biography written by an admirer with a broad scientific knowledge. When James writes this biography he should address the above. Debye made several important scientific contributions and clearly deserved his Nobel prize (for molecular rather than atomic structure). I will happily buy James' biography of him unless I get a complimentary copy for suggesting he writes it.

Quantum Mechanics works. Most practitioners accept this and don't worry too much about the many interpretations - Copenhagen, Bohm, many worlds etc. (see http://en.wikipedia.org/wiki/Interpretations_of_quantum_mechanics and choose your favourite). However, when considering coherent scattering processes, one is less likely to make a mess of things if one sticks to a classical wave description. This would be my advice - not taken by the person who wrote the article published in the Metro.

Colin

From: James Holton [mailto:[log in to unmask]]
Sent: 20 April 2013 05:07
To: Nave, Colin (DLSLtd,RAL,DIA)
Cc: ccp4bb
Subject: Re: [ccp4bb] popular piece on X-ray crystallography


It was the observation that atoms have "size".

Rutherford's alpha-particle experiment had shown that the nucleus was incredibly small, very much smaller than the distances between atoms, bringing about the "solar system" idea, which right away came into question because such atoms would produce synchrotron radiation and the electrons would rapidly decay from their orbits.  So, every nanosecond that the universe has not tuned itself into powdered neutronium is evidence against electrons in "orbit".  I think it was Laue who then proposed that the electrons must be bound very close to the nucleus (somehow).  Making the atoms very sharp points, and separated from each other by vast distances (relative to their size).  However, if the electrons really were confined to very sharp points, then the x-ray diffracted intensities from things like perfect rock salt crystals would not fall off with increasing sin(theta)/lambda.  They would be relatively constant (much like the scattering profile of Rutherford's experiment).  This was explained away as thermal vibrations "blurring" the atomic positions, making them look like they have "size", and causing the spots to fade with increasing resolution.
What Debye showed was that the temperature-dependence of this falloff was insufficient to give the atoms zero size, even when extrapolated to absolute zero (yes, they had liquid air in 1914), and this residual "size" was still comparable to bond lengths.  That meant the electrons really were distributed in a "cloud" very far from the nucleus, and apparently not falling in.  The only explanation is that the electron must be de-localised.  And that is a quantum effect.
I always thought that the paper Debye (1914) Ann. Phys. 348, 49-92 is perhaps one of the most remarkable in all of science.  It is the original reference for the B factor, the Lorentz factor, and also the paper that ended determinism.

At least, that is how I understand it.  I had to return my English translation of the Debye paper to the library.  I'll order my own copy.
-James Holton
MAD Scientist

On Fri, Apr 19, 2013 at 2:38 PM, <[log in to unmask]<mailto:[log in to unmask]>> wrote:
James

In 1915, I thought Debye and Scherrer were testing for interference between the electrons in different orbits within atoms. This was in order to test the Bohr model. They got rings but they were powder diffraction rings. The method never did identify planetary type orbitals. However Debye eventually adjusted his aims and the method did become useful despite "the requirement for objects to force themselves into ordered arrays"

Was there some other key observation Debye made in 1915 which you refer to?

Colin




-----Original Message-----
From: CCP4 bulletin board [mailto:[log in to unmask]<mailto:[log in to unmask]>] On Behalf Of James Holton
Sent: 19 April 2013 18:27
To: ccp4bb
Subject: Re: [ccp4bb] popular piece on X-ray crystallography

Because there is never more than one photon "in flight" at any given time.  Even at 1 photon/s, we still eventually get spots.

Atoms also don't emit synchrotron radiation, despite there being charged particles accelerating around their little "orbits" in there.

But yes, in 1913, people were still hoping there was another explanation for these two observations, other than that pesky quantum theory.  It was in 1915 that Debye made the key observation that collapsed determinism as we knew it.  I don't think he was very happy about that.
Neither was Einstein.

-James Holton
MAD Scientist

On 4/19/2013 9:43 AM, Tim Gruene wrote:
> -----BEGIN PGP SIGNED MESSAGE-----
> Hash: SHA1
>
> Hello Bernhard,
>
> could you explain this? A photon is the exchange particle of the
> electromagnetic force, i.e. as soon as you have more than two charged
> particles interacting there is more than one photon - why is it
> incorrect to use the term "multi-photon process" in the context of
> X-ray diffraction?
>
> Cheers,
> Tim
>
> On 04/19/2013 06:19 PM, Bernhard Rupp (Hofkristallrat a.D.) wrote:
>> However, a reviewer could reject the method on theoretical grounds
>> - the explanation of X-ray diffraction as a multi-photon process is
>> not correct....
>>
>> BR
>>
>> -----Original Message----- From: CCP4 bulletin board
>> [mailto:[log in to unmask]<mailto:[log in to unmask]>] On Behalf Of Peter Artymiuk Sent:
>> Friday, April 19, 2013 7:11 AM To: [log in to unmask]<mailto:[log in to unmask]> Subject:
>> Re: [ccp4bb] popular piece on X-ray crystallography
>>
>> Just to clarify, Jeremy was not being serious, but imagining what an
>> awkward / obnoxious grant reviewer might have said in 1913. But your
>> points would be valuable in rebutting such a view
>>
>> Pete
>>
>>
>>
>> On 19 Apr 2013, at 11:28, Navdeep Sidhu wrote:
>>
>>> Dear Pet,
>>>
>>> On the contrary, far as I know, nature seems to require most solids
>>> we see around us to be crystalline. And much of the rest is either
>>> gaseous or plasma. Hence, by the reasoning proposed, we are led to
>>> suspect a different conclusion: that it's studies dealing with the
>>> remaining state that have "little general applicability as the
>>> requirement for objects to force themselves into" the disordered
>>> arrays of the liquid state "is an absurd limitation." (However, I'd
>>> support funding it nevertheless.)
>>>
>>> Best regards, Navdeep
>>>
>>>
>>> --- On Fri, Apr 19, 2013 at 10:14:04AM +0100, Peter Artymiuk
>>> wrote:
>>>> Another of my colleagues, Jeremy Craven, is an NMR spectroscopist
>>>> and
>> bioinformatician. He is in referee mode at present and comments:
>>>>
>>>>> From: Jeremy Craven <[log in to unmask]<mailto:[log in to unmask]>> Date: 19 April
>>>>> 2013 10:05:18 GMT+01:00 To: Peter Artymiuk
>>>>> <[log in to unmask]<mailto:[log in to unmask]>> Subject: Re: Fwd: popular piece on
>>>>> X-ray crystallography
>>>>>
>>>>> I suspect this technique will have little general applicability as
>>>>> the
>> requirement for objects to force themselves into ordered arrays is an
>> absurd limitation. I would not support funding it.
>>>>> Jeremy
>>>>
>>>> I fear he may be right
>>>>
>>>> best wishes Pet
>>>>
>>>>
>>>>
>>>>
>>>> On 19 Apr 2013, at 09:53, David Briggs wrote:
>>>>
>>>>> Following on from that - readers may be interested in Stephen
>>>>>   Curry's post in the Guardian, regarding the Crystallography
>>>>> exhibit at the London Science Museum.
>>>>>
>>>>> http://www.guardian.co.uk/science/occams-corner/2013/apr/19/1
>>>>>
>>>>>
>>>>>
> regards,
>>>>> Dave
>>>>>
>>>>> ============================ David C. Briggs PhD
>>>>> http://about.me/david_briggs
>>>>>
>>>>>
>>>>> On 19 April 2013 09:44, Peter Artymiuk
>>>>> <[log in to unmask]<mailto:[log in to unmask]>>
>> wrote:
>>>>>> Dear all
>>>>>>
>>>>>> In Britain there is a free newspaper that you can pick up on
>>>>>> buses
>> called the Metro. My colleague Geoff Ford pointed out this short
>> feature on the history X-ray crystallography in last Monday's Metro
>> newspaper. I think it's rather good.
>>>>>> http://www.cosmonline.co.uk/blog/2013/04/14/conquering-realm-invi
>>>>>> si
>>>>>>
>>>>>>
> ble
>>>>>> best wishes Pete
>>>>>>
>>>>>>
>>>>>>
>>>>>> Prof Peter Artymiuk Krebs Institute Department of Molecular
>>>>>> Biology & Biotechnology University of Sheffield Sheffield
>>>>>> S10 2TN ENGLAND
>>>
>>> --- Navdeep Sidhu Departments of Structural Chemistry & Pediatrics
>>> II University of Goettingen Office Address: Institute of Inorganic
>>> Chemistry Tammannstrasse 4 37077 Goettingen Germany
>>> Email: [log in to unmask]<mailto:[log in to unmask]> Phone: +49 551 39 33059<tel:%2B49%20551%2039%2033059> Fax:
>>> +49 551 39 22582<tel:%2B49%20551%2039%2022582> Dept. Homepage: http://shelx.uni-ac.gwdg.de/
>>> ---
>> Prof Peter Artymiuk Krebs Institute Department of Molecular Biology &
>> Biotechnology University of Sheffield Sheffield S10 2TN ENGLAND
>>
> - --
> - --
> Dr Tim Gruene
> Institut fuer anorganische Chemie
> Tammannstr. 4
> D-37077 Goettingen
>
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