Try LONI.ucla.edu Atlases as they may have 0.5 mm and even better closer to the high res Paxinos-like resolution. KH
http://www.loni.ucla.edu/Atlases/Atlas_Detail.jsp?atlas_id=1/Rat.html
LONI<http://www.loni.ucla.edu/> > Atlases<http://www.loni.ucla.edu/Atlases/index.jsp>
Rat Atlas
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OVERVIEW
The Rat Atlas is a three dimensional (3D) computerized map of rat brain anatomy created with digital imaging techniques. Electronic sharing and interactive use are benefits afforded by a digital format, but the foremost advantage of this 3D map is its whole brain integrated representation of rat in situ neuroanatomy.
VIEW ATLAS
[http://www.loni.ucla.edu/images/Btn_ViewAtlas_up.gif]<http://www.loni.ucla.edu/Research/Atlases/Data/rat/RatAtlasViewer.shtml>
The Rat 2D Atlas viewer is a web-based 2D slice viewer that visualizes single slices at a time.
A complete description of the digital map is provided in a comprehensive set of sagittal planes (up to 0.031 mm spacing) containing stereotaxic reference grids. Sets of coronal and horizontal planes, sampled every 0.5 mm, also are included. Specific anatomic features are identified<http://www.loni.ucla.edu/Atlases/Atlas_Detail.jsp?atlas_id=1/Rat.html#> in a second collection of images. Stylized anatomic boundaries and structural labels were incorporated into selected orthogonal planes.
The user selects a modality and an orientation from the panels on the left. At the bottom of the viewer is a graphical representation of the rat brain with a bar through it and a thumbnail image. Dragging the bar will scroll through the images, and releasing it will update the main panel on the right with a high-resolution image of the selected slice.
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IN THIS SECTION:
About the Atlas
* Overview<http://www.loni.ucla.edu/Atlases/Atlas_Detail.jsp?atlas_id=1>
* Methods<http://www.loni.ucla.edu/Atlases/Atlas_Methods.jsp?atlas_id=1>
* Download<http://www.loni.ucla.edu/Atlases/Atlas_License.jsp?atlas_id=1>
Available Atlases
* Alzheimer's Disease Template<http://www.loni.ucla.edu/Atlases/Atlas_Detail.jsp?atlas_id=8>
* Chinese_56 Atlas<http://www.loni.ucla.edu/Atlases/Atlas_Detail.jsp?atlas_id=20>
* Human Atlas<http://www.loni.ucla.edu/Atlases/Atlas_Detail.jsp?atlas_id=4>
* ICBM 452 T1 Atlas<http://www.loni.ucla.edu/Atlases/Atlas_Detail.jsp?atlas_id=6>
* ICBM DTI-81 Atlas<http://www.loni.ucla.edu/Atlases/Atlas_Detail.jsp?atlas_id=15>
* ICBM Probabilistic Atlases<http://www.loni.ucla.edu/Atlases/Atlas_Detail.jsp?atlas_id=7>
* ICBM T2 Atlas<http://www.loni.ucla.edu/Atlases/Atlas_Detail.jsp?atlas_id=13>
* ICBM Template<http://www.loni.ucla.edu/Atlases/Atlas_Detail.jsp?atlas_id=5>
* LPBA40<http://www.loni.ucla.edu/Atlases/Atlas_Detail.jsp?atlas_id=12>
* Monkey Atlas<http://www.loni.ucla.edu/Atlases/Atlas_Detail.jsp?atlas_id=2>
* Mouse Atlas<http://www.loni.ucla.edu/Atlases/Atlas_Detail.jsp?atlas_id=3>
* Mouse Magnetic Resonance Microscopy Atlas<http://www.loni.ucla.edu/Atlases/Atlas_Detail.jsp?atlas_id=19>
* Mouse Minimum Deformation Atlas<http://www.loni.ucla.edu/Atlases/Atlas_Detail.jsp?atlas_id=18>
* Neonatal (P0) Mouse Nissl Brain Atlas<http://www.loni.ucla.edu/Atlases/Atlas_Detail.jsp?atlas_id=14>
* Neonatal (P0) MRI Mouse Brain Atlas<http://www.loni.ucla.edu/Atlases/Atlas_Detail.jsp?atlas_id=9>
* Rat Atlas<http://www.loni.ucla.edu/Atlases/Atlas_Detail.jsp?atlas_id=1>
* Vervet Atlas<http://www.loni.ucla.edu/Atlases/Atlas_Detail.jsp?atlas_id=21>
Khader M Hasan, PhD
Associate Professor of Radiology
MSE 168, Tel 713 500 7690 (FAX 713 500 7684)
University of Texas Health Science Center at Houston
Medical School
Diagnostic and Interventional Imaging
Magnetic Resonance Imaging Research Division
Diffusion Tensor Imaging Lab, Tel 713 500 7683
http://www.uth.tmc.edu/radiology/faculty/khader-m-hasan/index.html<http://www.uth.tmc.edu/radiology/faculty/hasan.html>
________________________________
From: SPM (Statistical Parametric Mapping) [[log in to unmask]] On Behalf Of Richard Morris [[log in to unmask]]
Sent: Wednesday, March 20, 2013 6:30 PM
To: [log in to unmask]
Subject: [SPM] rat MRI template needed
Dear list,
Our lab is delving into rat PET imaging and we have collected a bunch of PET data without any idea of how to analyze it.
As the local SPM "expert", I've been roped into helping. So I think I need a rat brain template to manually align the PET images against to identify the areas of activation. I imagine something like what is available for the mouse (wfu_pickatlas or spmmouse.org<http://spmmouse.org>), but I can't find anything similar for the rat.
I've checked the karolinska website (http://expmr.ki.se/research/ratatlas.jsp) but all I get is a 503 error.
Does anyone use SPM for rat PET analysis? If so, I would love to hear from you…
Best,
Rich
RICHARD MORRIS | Post Doctoral Fellow
Brain & Mind Research Institute
THE UNIVERSITY OF SYDNEY
Level 6 | 94 Mallett Street Camperdown | NSW | 2050
T +61 2 9114 4032
E [log in to unmask]<mailto:[log in to unmask]> | W http://balleinelab.com
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